Co-expression analysis

Gene ID rbah19i01_at
Gene name
Homology with ArabidopsisSimilar to At4g02530: chloroplast thylakoid lumen protein (HF=3e-1)
Module size 23 genes
NF 0.34
%ile 46.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8192.80.90rbah19i01_atrbah19i01--3e-1At4g02530chloroplast thylakoid lumen proteinO.I.H.G.S.X.
0.5167.50.94Contig4941_s_atContig4941--3e-2At4g17190FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2)O.I.H.G.S.X.
0.4559.30.92Contig7078_atContig7078--2e+0At4g13720inosine triphosphate pyrophosphatase, putative / HAM1 family proteinO.I.H.G.S.X.
0.4458.90.94Contig22235_atContig22235--2e+1At5g15560unknown proteinO.I.H.G.S.X.
0.4458.90.95Contig13143_s_atContig13143--5e+0At5g38565-O.I.H.G.S.X.
0.4255.20.93Contig25923_atContig25923--1e+0At5g21060homoserine dehydrogenase family proteinO.I.H.G.S.X.
0.3950.50.94Contig13743_atContig13743--1e+0At3g61172LCR8 (Low-molecular-weight cysteine-rich 8)O.I.H.G.S.X.
0.3950.50.94Contig636_atContig636type III LHCII CAB precursor protein-5e-38At5g54270LHCB3 (LIGHT-HARVESTING CHLOROPHYLL B-BINDING PROTEIN 3)O.I.H.G.S.X.
0.3849.50.94Contig8772_s_atContig8772--3e+0At5g50870UBC27 (ubiquitin-conjugating enzyme 27)O.I.H.G.S.X.
0.3647.10.95Contig26418_atContig26418--2e+0At4g32260ATP synthase familyO.I.H.G.S.X.
0.3443.60.93Contig20488_atContig20488--3e-1At1g30540ATPase, BadF/BadG/BcrA/BcrD-type familyO.I.H.G.S.X.
0.3342.60.93Contig19130_atContig19130--6e+0At5g62210embryo-specific protein-relatedO.I.H.G.S.X.
0.3037.00.93Contig7902_atContig7902--3e-15At3g54470uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS)O.I.H.G.S.X.
0.2935.50.94HV10J10u_atHV10J10u--2e-4At2g24200cytosol aminopeptidaseO.I.H.G.S.X.
0.2935.50.94Contig20907_atContig20907--2e+0At4g18425unknown proteinO.I.H.G.S.X.
0.2935.50.94Contig20649_atContig20649--6e+0At5g56100glycine-rich protein / oleosinO.I.H.G.S.X.
0.2732.10.94rbags5f04_s_atrbags5f04--2e+0At3g61678unknown proteinO.I.H.G.S.X.
0.2732.10.93Contig17594_atContig17594--2e+0At4g11300unknown proteinO.I.H.G.S.X.
0.2732.10.94Contig8078_atContig8078--7e-26At2g42880ATMPK20O.I.H.G.S.X.
0.2326.10.92Contig10340_atContig10340--2e-1At5g18690AGP25 (ARABINOGALACTAN PROTEINS 25)O.I.H.G.S.X.
0.2326.10.94Contig661_atContig661--4e-23At2g3939060S ribosomal protein L35 (RPL35B)O.I.H.G.S.X.
0.2224.20.95Contig11945_s_atContig11945--1e+0At1g13450DNA binding protein GT-1O.I.H.G.S.X.
0.2021.10.93Contig14455_atContig14455--4e-16At1g75760ER lumen protein retaining receptor family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.398.1GSM238429Embryo 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.897.0GSM398253Martin_1d_rep2GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
4.296.3GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.695.3GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.494.8GSM213443Barley seeds with P. aeruginosa PA5021 mutant for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO
3.294.3GSM238434Embryo 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.093.8GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.093.8GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
2.993.4GSM398263HS41-1_0d_rep3GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
2.792.7GSM398261HS41-1_0d_rep1GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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