Co-expression analysis

Gene ID	rbags17a06_s_at
Gene name
Homology with Arabidopsis	Similar to At5g42300: UBL5 (UBIQUITIN-LIKE PROTEIN 5) (HF=1e+0)
Module size	6 genes
NF	0.37
%ile	51.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	0.93	rbags17a06_s_at	rbags17a06	-	-	1e+0	At5g42300	UBL5 (UBIQUITIN-LIKE PROTEIN 5)	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.95	Contig4240_s_at	Contig4240	-	-	3e-3	At5g28630	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.94	HX08J20r_at	HX08J20r	-	-	2e+0	At4g15920	-	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.95	Contig17534_at	Contig17534	-	-	1e-5	At4g01040	glycosyl hydrolase family 18 protein	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.95	Contig18246_at	Contig18246	-	-	2e+0	At4g27410	RD26 (RESPONSIVE TO DESICCATION 26)	O.I.	H.G.	S.X.	Please select
0.24	27.2	0.94	Contig5857_at	Contig5857	-	-	2e-1	At1g02965	unknown protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.3	99.0	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
7.9	98.7	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.1	96.2	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.9	95.8	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.1	94.1	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
3.1	94.1	GSM161221	cold treatment rep3	GSE6993	Barley low temperature stress
3.0	93.8	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
3.0	93.8	GSM440968	Stressed palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
3.0	93.8	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
3.0	93.8	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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