Co-expression analysis

Gene ID rbags16h22_x_at
Gene name
Homology with ArabidopsisSimilar to At1g52820: 2-oxoglutarate-dependent dioxygenase, putative (HF=3e-1)
Module size 28 genes
NF 0.14
%ile 17.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9699.40.90rbags16h22_x_atrbags16h22--3e-1At1g528202-oxoglutarate-dependent dioxygenase, putativeO.I.H.G.S.X.
0.3240.30.90Contig391_atContig391--3e-25At3g15020malate dehydrogenase (NAD), mitochondrial, putativeO.I.H.G.S.X.
0.3138.60.93Contig16719_atContig16719--5e-1At5g13825unknown proteinO.I.H.G.S.X.
0.3037.00.93HVSMEi0002I06r2_s_atHVSMEi0002I06r2--3e+0At3g02220unknown proteinO.I.H.G.S.X.
0.2528.90.90Contig10407_atContig10407--3e-2At5g11930glutaredoxin family proteinO.I.H.G.S.X.
0.2326.10.91Contig6483_atContig6483--3e-1At2g23920unknown proteinO.I.H.G.S.X.
0.1919.60.93Contig25590_atContig25590--5e+0At5g28800unknown proteinO.I.H.G.S.X.
0.1716.90.95Contig12296_atContig12296--2e-2At4g29130HXK1 (HEXOKINASE 1)O.I.H.G.S.X.
0.1716.90.94Contig2670_x_atContig2670--5e-20At4g25820XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9)O.I.H.G.S.X.
0.1615.30.92Contig8075_atContig8075--5e-8At1g65420unknown proteinO.I.H.G.S.X.
0.1514.10.94Contig14901_atContig14901--1e+0At1g24060unknown proteinO.I.H.G.S.X.
0.1412.90.94Contig10422_atContig10422--2e+0At3g01327-O.I.H.G.S.X.
0.1311.60.95Contig11774_atContig11774--8e-87At5g46280DNA replication licensing factor, putativeO.I.H.G.S.X.
0.1311.60.93Contig20439_atContig20439--2e+0At4g29340PRF4 (PROFILIN 4)O.I.H.G.S.X.
0.1210.40.92Contig8475_atContig8475--3e+0At3g15670late embryogenesis abundant protein, putative / LEA protein, putativeO.I.H.G.S.X.
0.119.40.95Contig11010_atContig11010--4e-6At3g11960cleavage and polyadenylation specificity factor (CPSF) A subunit C-terminal domain-containing proteinO.I.H.G.S.X.
0.119.40.96Contig7815_s_atContig7815--2e-5At5g48930HCT (HYDROXYCINNAMOYL-COA SHIKIMATE/QUINATE HYDROXYCINNAMOYL TRANSFERASE)O.I.H.G.S.X.
0.119.40.93EBpi01_SQ004_K07_s_atEBpi01_SQ004_K07--2e+0At1g50470-O.I.H.G.S.X.
0.119.40.93HVSMEc0009F03r2_atHVSMEc0009F03r2--1e+0At4g18800ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D)O.I.H.G.S.X.
0.119.40.96Contig4760_s_atContig4760--1e+0At4g38700disease resistance-responsive family proteinO.I.H.G.S.X.
0.097.40.91HV_CEa0001D21r2_atHV_CEa0001D21r2--4e+0At5g44582unknown proteinO.I.H.G.S.X.
0.097.40.95Contig9658_atContig9658CesA4 protein-3e-10At5g44030CESA4 (CELLULOSE SYNTHASE A4)O.I.H.G.S.X.
0.097.40.92Contig6733_atContig6733--6e-2At3g44720ADT4 (arogenate dehydratase 4)O.I.H.G.S.X.
0.086.50.93S0000800179B07F1_s_atS0000800179B07F1--4e-6At3g10920MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1)O.I.H.G.S.X.
0.086.50.96Contig23565_atContig23565--2e+0At4g14819unknown proteinO.I.H.G.S.X.
0.075.80.96Contig6475_atContig6475--3e-10At3g01650RGLG1 (RING domain Ligase1)O.I.H.G.S.X.
0.075.80.94S0000800185F05F1_s_atS0000800185F05F1--3e-7At1g78870UBC35 (UBIQUITIN-CONJUGATING ENZYME 35)O.I.H.G.S.X.
0.054.10.92EBem04_SQ004_O17_s_atEBem04_SQ004_O17--3e+0At3g07860unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.595.1GSM238409Pericarp 4DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.494.8GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.294.3GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.294.3GSM282040Malting_kilned_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
3.093.8GSM282036Malting_steeped_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
2.893.1GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.792.7GSM282038Malting_kilned_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO
2.692.3GSM282031Malting_day1_Harrington_rep1GSE11200Expression data from malting barley seedsLink to GEO
2.390.9GSM261043before 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
2.290.3GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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