Co-expression analysis

Gene ID	rbaal9k07_at
Gene name
Homology with Arabidopsis	Similar to At5g06380: unknown protein (HF=1e+0)
Module size	22 genes
NF	0.31
%ile	41.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.98	100.0	0.90	rbaal9k07_at	rbaal9k07	-	-	1e+0	At5g06380	unknown protein	O.I.	H.G.	S.X.	Please select
0.52	68.3	0.91	Contig13479_at	Contig13479	-	-	6e-8	At5g38820	amino acid transporter family protein	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.94	Contig14455_at	Contig14455	-	-	4e-16	At1g75760	ER lumen protein retaining receptor family protein	O.I.	H.G.	S.X.	Please select
0.42	55.2	0.94	Contig13552_at	Contig13552	-	-	7e-3	At1g15510	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.94	Contig16226_at	Contig16226	-	-	7e-3	At1g79270	ECT8 (evolutionarily conserved C-terminal region 8)	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.94	rbah19i01_s_at	rbah19i01	-	-	3e-1	At4g02530	chloroplast thylakoid lumen protein	O.I.	H.G.	S.X.	Please select
0.37	47.9	0.95	EBro03_SQ005_C24_s_at	EBro03_SQ005_C24	-	-	4e+0	At5g40180	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.92	Contig14156_at	Contig14156	-	-	3e+0	At1g74960	FAB1 (FATTY ACID BIOSYNTHESIS 1)	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.93	Contig6040_at	Contig6040	-	-	1e-18	At5g38830	tRNA synthetase class I (C) family protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.94	Contig9922_s_at	Contig9922	-	-	4e+0	At5g49050	-	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.95	Contig13187_at	Contig13187	-	-	1e-2	At1g67320	DNA primase, large subunit family	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.94	Contig5284_at	Contig5284	-	-	2e-82	At5g22780	adaptin family protein	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.93	Contig7515_at	Contig7515	-	-	8e-9	At2g43640	signal recognition particle 14 kDa family protein / SRP14 family protein	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.95	Contig24303_at	Contig24303	-	-	3e-1	At3g09800	protein binding	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.94	Contig12406_at	Contig12406	-	-	2e-7	At1g76850	SEC5A (EXOCYST COMPLEX COMPONENT SEC5)	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.94	Contig11763_at	Contig11763	-	-	7e-2	At4g09270	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.95	Contig5487_s_at	Contig5487	-	-	3e-1	At5g65207	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.94	Contig10961_at	Contig10961	-	-	2e-1	At1g78260	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.90	Contig4349_at	Contig4349	-	-	7e-39	At3g03960	chaperonin, putative	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.95	Contig3650_at	Contig3650	-	-	3e+0	At1g44835	YbaK/prolyl-tRNA synthetase family protein	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.96	HZ52D05r_s_at	HZ52D05r	-	-	4e+0	At5g40180	unknown protein	O.I.	H.G.	S.X.	Please select
0.16	15.3	0.94	Contig17823_at	Contig17823	-	-	2e+0	At5g52720	metal ion binding	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.8	99.4	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
4.1	96.2	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.8	95.7	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
3.4	94.8	GSM160831	7% SWC rep1	GSE6990	Barley drought stress
3.1	94.1	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
2.9	93.4	GSM213436	Barley seeds with P. aeruginosa PAO1 for 12hr	GSE8618	P. aeruginosa virulent factor to barley
2.8	93.1	GSM382232	Root_Hg1	GSE15295	Mercury toxicity in barley roots
2.8	93.1	GSM160819	38% SWC rep1	GSE6990	Barley drought stress
2.8	93.1	GSM213443	Barley seeds with P. aeruginosa PA5021 mutant for 12hr	GSE8618	P. aeruginosa virulent factor to barley
2.8	93.1	GSM161148	7% SWC rep3	GSE6990	Barley drought stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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