Co-expression analysis

Gene ID	rbaal9h21_s_at
Gene name
Homology with Arabidopsis	Similar to At1g79040: PSBR (photosystem II subunit R) (HF=5e-5)
Module size	7 genes
NF	0.70
%ile	91.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	92.5	0.76	rbaal9h21_s_at	rbaal9h21	-	-	5e-5	At1g79040	PSBR (photosystem II subunit R)	O.I.	H.G.	S.X.	Please select
0.92	98.4	0.79	Contig11479_at	Contig11479	-	-	9e-3	At4g25770	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.90	Contig9009_s_at	Contig9009	-	-	4e-1	At3g10116	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.91	HVSMEb0001K06r2_at	HVSMEb0001K06r2	-	-	8e-1	At5g58210	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.87	HVSMEc0004G20r2_at	HVSMEc0004G20r2	-	-	1e+1	At5g28610	-	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.80	Contig18349_at	Contig18349	-	-	1e-1	At4g14770	TCX2 (TESMIN/TSO1-LIKE CXC 2)	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.92	Contig3986_s_at	Contig3986	-	-	6e-2	At4g13450	universal stress protein (USP) family protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.2	98.5	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
5.6	97.7	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
4.5	96.7	GSM261043	before 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.3	96.4	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds
4.2	96.3	GSM398263	HS41-1_0d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.1	96.2	GSM311263	kara_without_aphids_2	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
4.0	96.0	GSM398262	HS41-1_0d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.0	96.0	GSM440974	Stressed awn_Rep3	GSE17669	Gene expression in the barley spike during drought stress
3.1	94.1	GSM261042	before 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.0	93.8	GSM372945	genotype: Mla6 - pathogen isolates: 5874 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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