Co-expression analysis

Gene ID	rbaal31f01_s_at
Gene name
Homology with Arabidopsis	Similar to At1g76590: zinc-binding family protein (HF=5e-1)
Module size	6 genes
NF	0.48
%ile	67.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	92.5	0.90	rbaal31f01_s_at	rbaal31f01	-	-	5e-1	At1g76590	zinc-binding family protein	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.94	Contig4262_s_at	Contig4262	-	-	3e-2	At4g27000	ATRBP45C	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.95	Contig3300_at	Contig3300	-	-	3e-44	At4g15530	PPDK (pyruvate orthophosphate dikinase)	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.93	Contig5770_s_at	Contig5770	-	-	5e-42	At1g59900	AT-E1 ALPHA	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.94	Contig19781_at	Contig19781	-	-	2e+0	At1g67035	unknown protein	O.I.	H.G.	S.X.	Please select
0.14	12.9	0.93	Contig7202_s_at	Contig7202	-	-	5e-3	At5g47630	mtACP3 (mitochondrial acyl carrier protein 3)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.5	96.7	GSM261074	Albina e-16 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.8	95.7	GSM261064	Xantha s-46 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.5	95.1	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.5	95.1	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.4	94.8	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.3	94.6	GSM160819	38% SWC rep1	GSE6990	Barley drought stress
3.2	94.3	GSM261032	Dicktoo control-rep3	GSE10329	Low temperature stress in cv. Dicktoo
3.1	94.1	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.0	93.8	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.9	93.4	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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