CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID rbaal2j07_at

Gene name
Homology with Arabidopsis Similar to At5g03850: 40S ribosomal protein S28 (RPS28B) (HF=5e+0)

Module size 40 genes

NF 0.64

%ile 86.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.90 95.7 0.94 rbaal2j07_at rbaal2j07 - - 5e+0 At5g03850 40S ribosomal protein S28 (RPS28B) O.I. H.G. S.X.
0.75 89.5 0.95 HS18F13u_at HS18F13u - - 2e-1 At5g03130 unknown protein O.I. H.G. S.X.
0.75 89.5 0.96 HS05N06r_at HS05N06r - - 9e-1 At1g79110 protein binding / zinc ion binding O.I. H.G. S.X.
0.75 89.5 0.95 HT05G10u_at HT05G10u - - 9e-1 At1g02780 emb2386 (embryo defective 2386) O.I. H.G. S.X.
0.72 87.4 0.95 HVSMEm0004M18r2_at HVSMEm0004M18r2 - - 2e+0 At3g09970 calcineurin-like phosphoesterase family protein O.I. H.G. S.X.
0.71 87.1 0.95 EBem06_SQ002_C05_at EBem06_SQ002_C05 - - 4e+0 At5g55131 - O.I. H.G. S.X.
0.70 86.0 0.96 9507414_R_4264-4644_at 9507414_R_4264-4644 - - 1e+1 At5g06320 NHL3 O.I. H.G. S.X.
0.70 86.0 0.95 HVSMEc0014E22r2_at HVSMEc0014E22r2 - - 1e+1 At4g33050 EDA39 (embryo sac development arrest 39) O.I. H.G. S.X.
0.70 86.0 0.95 HVSMEf0019H01r2_at HVSMEf0019H01r2 - - 1e+1 At3g27460 unknown protein O.I. H.G. S.X.
0.69 85.5 0.96 Contig21533_at Contig21533 - - 2e+0 At1g24000 Bet v I allergen family protein O.I. H.G. S.X.
0.69 85.5 0.96 Contig17900_at Contig17900 - - 6e+0 At4g05170 DNA binding / transcription factor O.I. H.G. S.X.
0.69 85.5 0.95 Contig26351_at Contig26351 - - 1e+0 At4g12820 F-box family protein O.I. H.G. S.X.
0.68 85.1 0.95 HW03P01u_at HW03P01u - - 1e+1 At5g13190 - O.I. H.G. S.X.
0.68 85.1 0.96 EBma08_SQ003_L03_at EBma08_SQ003_L03 - - 6e-2 At2g40060 protein binding / structural molecule O.I. H.G. S.X.
0.67 84.7 0.95 EBca01_SQ004_P03_x_at EBca01_SQ004_P03 - - 2e+0 At1g06960 small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative O.I. H.G. S.X.
0.67 84.7 0.95 S0000800072B12F1_at S0000800072B12F1 - - 9e+0 At1g07476 unknown protein O.I. H.G. S.X.
0.67 84.7 0.95 Contig23458_at Contig23458 - - 5e+0 At5g48950 thioesterase family protein O.I. H.G. S.X.
0.64 80.9 0.96 Contig245_s_at Contig245 - - 2e+0 At4g16380 metal ion binding O.I. H.G. S.X.
0.64 80.9 0.95 HA06j10r_at HA06j10r - - 2e+0 At4g21920 unknown protein O.I. H.G. S.X.
0.64 80.9 0.95 Contig5979_at Contig5979 - - 4e-15 At5g20080 NADH-cytochrome b5 reductase, putative O.I. H.G. S.X.
0.64 80.9 0.95 HS08P03u_at HS08P03u - - 9e+0 At2g18530 protein kinase family protein O.I. H.G. S.X.
0.63 80.3 0.96 HV_CEa0014H05r2_at HV_CEa0014H05r2 - - 3e+0 At5g64850 unknown protein O.I. H.G. S.X.
0.62 79.1 0.95 rbags18m16_at rbags18m16 - - 2e+0 At2g35790 unknown protein O.I. H.G. S.X.
0.61 78.7 0.95 HT11A16u_x_at HT11A16u - - 2e+0 At1g64080 unknown protein O.I. H.G. S.X.
0.61 78.7 0.97 EBem04_SQ003_H15_at EBem04_SQ003_H15 - - 3e+0 At5g33806 unknown protein O.I. H.G. S.X.
0.61 78.7 0.95 2623978_R_1403-2212_at 2623978_R_1403-2212 - - 2e+0 At3g16350 myb family transcription factor O.I. H.G. S.X.
0.59 75.8 0.96 Contig10097_at Contig10097 - - 4e-1 At3g16450 jacalin lectin family protein O.I. H.G. S.X.
0.59 75.8 0.95 Contig23039_at Contig23039 - - 4e-2 At2g45920 U-box domain-containing protein O.I. H.G. S.X.
0.58 74.9 0.96 HVSMEh0084N15r2_s_at HVSMEh0084N15r2 - - 6e+0 At1g48510 cytochrome c oxidase assembly protein surfeit-related O.I. H.G. S.X.
0.58 74.9 0.95 Contig12986_at Contig12986 - - 7e-13 At3g28007 nodulin MtN3 family protein O.I. H.G. S.X.
0.57 74.9 0.95 HU12L19u_at HU12L19u - - 4e+0 At5g46790 unknown protein O.I. H.G. S.X.
0.57 74.9 0.96 EBro02_SQ008_P15_at EBro02_SQ008_P15 - - 1e+1 At5g43211 unknown protein O.I. H.G. S.X.
0.57 74.9 0.95 EBro08_SQ011_O23_at EBro08_SQ011_O23 - - 1e+0 At1g03430 AHP5 (HISTIDINE-CONTAINING PHOSPHOTRANSFER FACTOR 5) O.I. H.G. S.X.
0.56 74.3 0.96 HY02C19u_at HY02C19u - - 5e+0 At4g15610 integral membrane family protein O.I. H.G. S.X.
0.54 70.3 0.96 HVSMEg0002G01r2_x_at HVSMEg0002G01r2 - - 6e+0 At5g39360 EDL2 (EID1-like 2) O.I. H.G. S.X.
0.53 69.7 0.95 Contig19421_at Contig19421 - - 3e-1 At1g18380 - O.I. H.G. S.X.
0.53 69.7 0.95 HVSMEf0019I03r2_s_at HVSMEf0019I03r2 - - 4e+0 At3g57770 protein kinase, putative O.I. H.G. S.X.
0.52 68.3 0.95 HD03N13u_at HD03N13u - - 2e+1 At5g42591 unknown protein O.I. H.G. S.X.
0.50 66.9 0.96 HY06F24u_x_at HY06F24u - - 1e+1 At5g05710 pleckstrin homology (PH) domain-containing protein O.I. H.G. S.X.
0.45 59.3 0.96 V00087.1_at V00087.1 - - 3e-1 At5g43525 - O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.90	95.7	0.94	rbaal2j07_at	rbaal2j07	-	-	5e+0	At5g03850	40S ribosomal protein S28 (RPS28B)	O.I.	H.G.	S.X.
0.75	89.5	0.95	HS18F13u_at	HS18F13u	-	-	2e-1	At5g03130	unknown protein	O.I.	H.G.	S.X.
0.75	89.5	0.96	HS05N06r_at	HS05N06r	-	-	9e-1	At1g79110	protein binding / zinc ion binding	O.I.	H.G.	S.X.
0.75	89.5	0.95	HT05G10u_at	HT05G10u	-	-	9e-1	At1g02780	emb2386 (embryo defective 2386)	O.I.	H.G.	S.X.
0.72	87.4	0.95	HVSMEm0004M18r2_at	HVSMEm0004M18r2	-	-	2e+0	At3g09970	calcineurin-like phosphoesterase family protein	O.I.	H.G.	S.X.
0.71	87.1	0.95	EBem06_SQ002_C05_at	EBem06_SQ002_C05	-	-	4e+0	At5g55131	-	O.I.	H.G.	S.X.
0.70	86.0	0.96	9507414_R_4264-4644_at	9507414_R_4264-4644	-	-	1e+1	At5g06320	NHL3	O.I.	H.G.	S.X.
0.70	86.0	0.95	HVSMEc0014E22r2_at	HVSMEc0014E22r2	-	-	1e+1	At4g33050	EDA39 (embryo sac development arrest 39)	O.I.	H.G.	S.X.
0.70	86.0	0.95	HVSMEf0019H01r2_at	HVSMEf0019H01r2	-	-	1e+1	At3g27460	unknown protein	O.I.	H.G.	S.X.
0.69	85.5	0.96	Contig21533_at	Contig21533	-	-	2e+0	At1g24000	Bet v I allergen family protein	O.I.	H.G.	S.X.
0.69	85.5	0.96	Contig17900_at	Contig17900	-	-	6e+0	At4g05170	DNA binding / transcription factor	O.I.	H.G.	S.X.
0.69	85.5	0.95	Contig26351_at	Contig26351	-	-	1e+0	At4g12820	F-box family protein	O.I.	H.G.	S.X.
0.68	85.1	0.95	HW03P01u_at	HW03P01u	-	-	1e+1	At5g13190	-	O.I.	H.G.	S.X.
0.68	85.1	0.96	EBma08_SQ003_L03_at	EBma08_SQ003_L03	-	-	6e-2	At2g40060	protein binding / structural molecule	O.I.	H.G.	S.X.
0.67	84.7	0.95	EBca01_SQ004_P03_x_at	EBca01_SQ004_P03	-	-	2e+0	At1g06960	small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative	O.I.	H.G.	S.X.
0.67	84.7	0.95	S0000800072B12F1_at	S0000800072B12F1	-	-	9e+0	At1g07476	unknown protein	O.I.	H.G.	S.X.
0.67	84.7	0.95	Contig23458_at	Contig23458	-	-	5e+0	At5g48950	thioesterase family protein	O.I.	H.G.	S.X.
0.64	80.9	0.96	Contig245_s_at	Contig245	-	-	2e+0	At4g16380	metal ion binding	O.I.	H.G.	S.X.
0.64	80.9	0.95	HA06j10r_at	HA06j10r	-	-	2e+0	At4g21920	unknown protein	O.I.	H.G.	S.X.
0.64	80.9	0.95	Contig5979_at	Contig5979	-	-	4e-15	At5g20080	NADH-cytochrome b5 reductase, putative	O.I.	H.G.	S.X.
0.64	80.9	0.95	HS08P03u_at	HS08P03u	-	-	9e+0	At2g18530	protein kinase family protein	O.I.	H.G.	S.X.
0.63	80.3	0.96	HV_CEa0014H05r2_at	HV_CEa0014H05r2	-	-	3e+0	At5g64850	unknown protein	O.I.	H.G.	S.X.
0.62	79.1	0.95	rbags18m16_at	rbags18m16	-	-	2e+0	At2g35790	unknown protein	O.I.	H.G.	S.X.
0.61	78.7	0.95	HT11A16u_x_at	HT11A16u	-	-	2e+0	At1g64080	unknown protein	O.I.	H.G.	S.X.
0.61	78.7	0.97	EBem04_SQ003_H15_at	EBem04_SQ003_H15	-	-	3e+0	At5g33806	unknown protein	O.I.	H.G.	S.X.
0.61	78.7	0.95	2623978_R_1403-2212_at	2623978_R_1403-2212	-	-	2e+0	At3g16350	myb family transcription factor	O.I.	H.G.	S.X.
0.59	75.8	0.96	Contig10097_at	Contig10097	-	-	4e-1	At3g16450	jacalin lectin family protein	O.I.	H.G.	S.X.
0.59	75.8	0.95	Contig23039_at	Contig23039	-	-	4e-2	At2g45920	U-box domain-containing protein	O.I.	H.G.	S.X.
0.58	74.9	0.96	HVSMEh0084N15r2_s_at	HVSMEh0084N15r2	-	-	6e+0	At1g48510	cytochrome c oxidase assembly protein surfeit-related	O.I.	H.G.	S.X.
0.58	74.9	0.95	Contig12986_at	Contig12986	-	-	7e-13	At3g28007	nodulin MtN3 family protein	O.I.	H.G.	S.X.
0.57	74.9	0.95	HU12L19u_at	HU12L19u	-	-	4e+0	At5g46790	unknown protein	O.I.	H.G.	S.X.
0.57	74.9	0.96	EBro02_SQ008_P15_at	EBro02_SQ008_P15	-	-	1e+1	At5g43211	unknown protein	O.I.	H.G.	S.X.
0.57	74.9	0.95	EBro08_SQ011_O23_at	EBro08_SQ011_O23	-	-	1e+0	At1g03430	AHP5 (HISTIDINE-CONTAINING PHOSPHOTRANSFER FACTOR 5)	O.I.	H.G.	S.X.
0.56	74.3	0.96	HY02C19u_at	HY02C19u	-	-	5e+0	At4g15610	integral membrane family protein	O.I.	H.G.	S.X.
0.54	70.3	0.96	HVSMEg0002G01r2_x_at	HVSMEg0002G01r2	-	-	6e+0	At5g39360	EDL2 (EID1-like 2)	O.I.	H.G.	S.X.
0.53	69.7	0.95	Contig19421_at	Contig19421	-	-	3e-1	At1g18380	-	O.I.	H.G.	S.X.
0.53	69.7	0.95	HVSMEf0019I03r2_s_at	HVSMEf0019I03r2	-	-	4e+0	At3g57770	protein kinase, putative	O.I.	H.G.	S.X.
0.52	68.3	0.95	HD03N13u_at	HD03N13u	-	-	2e+1	At5g42591	unknown protein	O.I.	H.G.	S.X.
0.50	66.9	0.96	HY06F24u_x_at	HY06F24u	-	-	1e+1	At5g05710	pleckstrin homology (PH) domain-containing protein	O.I.	H.G.	S.X.
0.45	59.3	0.96	V00087.1_at	V00087.1	-	-	3e-1	At5g43525	-	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.1 96.2 GSM282031 Malting_day1_Harrington_rep1 GSE11200 Expression data from malting barley seeds
3.5 95.1 GSM382232 Root_Hg1 GSE15295 Mercury toxicity in barley roots
3.5 95.1 GSM71140 OWB-D stress replicate 2 GSE3170 Barley single feature polymorphisms and drought stress gene expression
3.4 94.8 GSM261047 after 3 days in mannitol medium rep3 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.4 94.8 GSM238435 Embryo 24 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
3.3 94.6 GSM282036 Malting_steeped_Morex_rep2 GSE11200 Expression data from malting barley seeds
3.2 94.3 GSM282033 Malting_day4_Harrington_rep4 GSE11200 Expression data from malting barley seeds
3.2 94.3 GSM261045 after 3 days in mannitol medium rep1 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.1 94.1 GSM161148 7% SWC rep3 GSE6990 Barley drought stress
2.9 93.4 GSM382234 Root_Hg3 GSE15295 Mercury toxicity in barley roots

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
4.1	96.2	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
3.5	95.1	GSM382232	Root_Hg1	GSE15295	Mercury toxicity in barley roots
3.5	95.1	GSM71140	OWB-D stress replicate 2	GSE3170	Barley single feature polymorphisms and drought stress gene expression
3.4	94.8	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.4	94.8	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.3	94.6	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
3.2	94.3	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
3.2	94.3	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.1	94.1	GSM161148	7% SWC rep3	GSE6990	Barley drought stress
2.9	93.4	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

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Gene ID	rbaal2j07_at
Gene name
Homology with Arabidopsis	Similar to At5g03850: 40S ribosomal protein S28 (RPS28B) (HF=5e+0)
Module size	40 genes
NF	0.64
%ile	86.3

Co-expression analysis

Gene ID rbaal2j07_at Gene name Homology with ArabidopsisSimilar to At5g03850: 40S ribosomal protein S28 (RPS28B) (HF=5e+0) Module size 40 genes NF 0.64 %ile 86.3

Co-expressed genes

Click More genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID rbaal2j07_at

Gene name
Homology with Arabidopsis Similar to At5g03850: 40S ribosomal protein S28 (RPS28B) (HF=5e+0)

Module size 40 genes

NF 0.64

%ile 86.3

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays