Co-expression analysis

Gene ID rbaal29b24_at
Gene name
Homology with ArabidopsisSimilar to At5g15790: zinc finger (C3HC4-type RING finger) family protein (HF=1e-6)
Module size 35 genes
NF 0.25
%ile 32.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8795.00.91rbaal29b24_atrbaal29b24--1e-6At5g15790zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.4963.70.94Contig18972_atContig18972--4e+0At3g05165sugar transporter, putativeO.I.H.G.S.X.
0.4255.20.94Contig18916_atContig18916--9e-1At5g09995unknown proteinO.I.H.G.S.X.
0.4255.20.94Contig25363_atContig25363cytokinin dehydrogenase 2-3e-5At3g63440CKX6 (CYTOKININ OXIDASE/DEHYDROGENASE 6)O.I.H.G.S.X.
0.4153.90.94Contig10187_atContig10187--1e-2At1g72080unknown proteinO.I.H.G.S.X.
0.3950.50.95Contig9902_atContig9902--2e+0At5g35170adenylate kinase family proteinO.I.H.G.S.X.
0.3849.50.93Contig16046_atContig16046--1e+0At5g10860CBS domain-containing proteinO.I.H.G.S.X.
0.3849.50.94Contig5709_atContig5709--3e-56At2g30200[acyl-carrier-protein] S-malonyltransferase/ binding / catalytic/ transferaseO.I.H.G.S.X.
0.3647.10.94HF12C18r_atHF12C18r--1e+0At5g22410peroxidase, putativeO.I.H.G.S.X.
0.3342.60.95Contig10389_atContig10389--2e+0At5g67490unknown proteinO.I.H.G.S.X.
0.3240.30.92Contig7088_atContig7088alpha-amylase type A, EC 3.2.1.1-5e-2At4g25000AMY1 (ALPHA-AMYLASE-LIKE)O.I.H.G.S.X.
0.3138.60.94HY09E16u_s_atHY09E16u--4e+0At5g02680ATP binding / aminoacyl-tRNA ligase/ nucleotide bindingO.I.H.G.S.X.
0.3037.00.93Contig22130_atContig22130--5e-6At5g43760KCS20 (3-KETOACYL-COA SYNTHASE 20)O.I.H.G.S.X.
0.3037.00.95Contig25477_atContig25477--6e+0At5g33421unknown proteinO.I.H.G.S.X.
0.3037.00.95Contig9852_atContig9852--2e+1At5g62260DNA bindingO.I.H.G.S.X.
0.3037.00.95Contig7966_atContig7966--4e+0At2g42830SHP2 (SHATTERPROOF 2)O.I.H.G.S.X.
0.2935.50.93Contig1362_s_atContig1362--8e-25At3g61110ARS27A (ARABIDOPSIS RIBOSOMAL PROTEIN S27)O.I.H.G.S.X.
0.2835.50.94S0000800185F05F1_s_atS0000800185F05F1--3e-7At1g78870UBC35 (UBIQUITIN-CONJUGATING ENZYME 35)O.I.H.G.S.X.
0.2630.40.94Contig1063_s_atContig1063--1e-74At1g31340RUB1 (RELATED TO UBIQUITIN 1)O.I.H.G.S.X.
0.2528.90.94Contig19685_atContig19685--2e+0At1g64010serpin, putative / serine protease inhibitor, putativeO.I.H.G.S.X.
0.2528.90.94Contig6627_atContig6627--1e-6At1g77710-O.I.H.G.S.X.
0.2528.90.95Contig8129_atContig8129--5e-1At1g23145RALFL2 (RALF-LIKE 2)O.I.H.G.S.X.
0.2326.10.93Contig9452_atContig9452--4e-28At5g19330armadillo/beta-catenin repeat family protein / BTB/POZ domain-containing proteinO.I.H.G.S.X.
0.2326.10.93Contig8401_atContig8401casein kinase II alpha-7e-103At5g67380CKA1 (CASEIN KINASE ALPHA 1)O.I.H.G.S.X.
0.2326.10.95Contig12434_atContig12434--2e-6At4g30930NFD1 (NUCLEAR FUSION DEFECTIVE 1)O.I.H.G.S.X.
0.2224.20.94Contig11536_atContig11536--5e-29At5g41360XPB2O.I.H.G.S.X.
0.2021.10.95Contig8311_atContig8311--5e-15At1g65430zinc finger protein-relatedO.I.H.G.S.X.
0.1919.60.95Contig6616_atContig6616--1e-57At4g35260IDH1 (ISOCITRATE DEHYDROGENASE 1)O.I.H.G.S.X.
0.1919.60.94Contig15889_atContig15889--2e+0At4g29590methyltransferaseO.I.H.G.S.X.
0.1615.30.95Contig13783_atContig13783--4e-1At2g41225unknown proteinO.I.H.G.S.X.
0.1514.10.94Contig14153_s_atContig14153--1e-14At1g20575dolichyl-phosphate beta-D-mannosyltransferase, putative / dolichol-phosphate mannosyltransferase, putative / mannose-P-dolichol synthase, putativeO.I.H.G.S.X.
0.1514.10.94Contig11774_atContig11774--8e-87At5g46280DNA replication licensing factor, putativeO.I.H.G.S.X.
0.1210.40.94Contig12673_atContig12673--1e-5At4g15470-O.I.H.G.S.X.
0.108.40.95Contig25611_atContig25611--2e-2At1g68870unknown proteinO.I.H.G.S.X.
0.108.40.93Contig8478_atContig8478--1e-2At1g31060unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.096.0GSM382234Root_Hg3GSE15295Mercury toxicity in barley rootsLink to GEO
3.895.7GSM382233Root_Hg2GSE15295Mercury toxicity in barley rootsLink to GEO
3.294.3GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.294.3GSM130803JA, biological rep1GSE5605Expression data from barley under salinity stress and JA treatmentLink to GEO
3.194.1GSM382232Root_Hg1GSE15295Mercury toxicity in barley rootsLink to GEO
2.792.7GSM431547pathogen isolates: Mock - rep2GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
2.692.3GSM431550pathogen isolates: Polymyxa graminis - rep2GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
2.591.9GSM1611487% SWC rep3GSE6990Barley drought stressLink to GEO
2.491.4GSM382236Root_Control2GSE15295Mercury toxicity in barley rootsLink to GEO
2.290.3GSM382235Root_Control1GSE15295Mercury toxicity in barley rootsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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