Co-expression analysis

Gene ID	rbaal21e22_x_at
Gene name
Homology with Arabidopsis	Similar to At3g61898: unknown protein (HF=1e+0)
Module size	6 genes
NF	0.44
%ile	60.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	87.1	0.83	rbaal21e22_x_at	rbaal21e22	-	-	1e+0	At3g61898	unknown protein	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.85	Contig10483_at	Contig10483	-	-	5e-11	At1g14290	SBH2 (SPHINGOID BASE HYDROXYLASE 2)	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.85	Contig12910_at	Contig12910	-	-	1e-1	At1g18590	SOT17 (SULFOTRANSFERASE 17)	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.84	Contig3141_at	Contig3141	-	-	2e-27	At2g35690	ACX5 (ACYL-COA OXIDASE 5)	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.86	Contig5840_at	Contig5840	-	-	2e-2	At5g23570	SGS3 (SUPPRESSOR OF GENE SILENCING 3)	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.83	Contig4278_at	Contig4278	-	-	7e-2	At1g76550	pyrophosphate--fructose-6-phosphate 1-phosphotransferase alpha subunit, putative / pyrophosphate-dependent 6-phosphofructose-1-kinase, putative	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.6	99.3	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
6.1	98.0	GSM215730	Control (DMSO) treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
5.3	97.4	GSM431547	pathogen isolates: Mock - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
5.0	97.2	GSM431548	pathogen isolates: Mock - rep3	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.9	97.1	GSM215731	gibberellin treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
4.8	97.0	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.8	97.0	GSM431550	pathogen isolates: Polymyxa graminis - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.4	96.6	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.3	96.4	GSM431551	pathogen isolates: Polymyxa graminis - rep3	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.2	96.3	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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