Co-expression analysis

Gene ID	rbaak34i24_s_at
Gene name
Homology with Arabidopsis	Similar to At5g59870: HTA6 (HF=3e-1)
Module size	6 genes
NF	0.18
%ile	22.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.38	49.5	0.92	rbaak34i24_s_at	rbaak34i24	-	-	3e-1	At5g59870	HTA6	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.92	Contig21838_at	Contig21838	-	-	9e-24	At1g12360	KEU (keule)	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.92	Contig9548_at	Contig9548	-	-	9e-7	At3g63270	unknown protein	O.I.	H.G.	S.X.	Please select
0.12	10.4	0.92	Contig2589_at	Contig2589	-	-	1e-3	At5g13500	unknown protein	O.I.	H.G.	S.X.	Please select
0.12	10.4	0.92	Contig16161_at	Contig16161	-	-	7e-12	At1g26160	metal-dependent phosphohydrolase HD domain-containing protein	O.I.	H.G.	S.X.	Please select
0.11	9.4	0.92	Contig1386_s_at	Contig1386	-	-	3e+0	At4g23080	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.5	98.8	GSM431571	pathogen isolates: Polymyxa betae - rep1	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
7.3	98.5	GSM431570	pathogen isolates: Mock inoculated control - rep3	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
7.0	98.4	GSM431573	pathogen isolates: Polymyxa betae - rep3	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
6.8	98.3	GSM431568	pathogen isolates: Mock inoculated control - rep1	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
6.5	98.2	GSM431550	pathogen isolates: Polymyxa graminis - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
5.7	97.7	GSM431547	pathogen isolates: Mock - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
5.7	97.7	GSM431569	pathogen isolates: Mock inoculated control - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
5.7	97.7	GSM431551	pathogen isolates: Polymyxa graminis - rep3	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.8	97.0	GSM431548	pathogen isolates: Mock - rep3	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.5	96.7	GSM431572	pathogen isolates: Polymyxa betae - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage