Co-expression analysis

Gene ID	basd0c03_s_at
Gene name
Homology with Arabidopsis	Similar to At3g16770: ATEBP (ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN) (HF=3e+0)
Module size	6 genes
NF	0.59
%ile	81.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	80.3	0.94	basd0c03_s_at	basd0c03	-	-	3e+0	At3g16770	ATEBP (ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN)	O.I.	H.G.	S.X.	Please select
0.91	98.1	0.94	Contig18670_at	Contig18670	-	-	6e-4	At3g26850	-	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.94	Contig11039_at	Contig11039	multiple inositol polyphosphate phosphatase PhyIIa2	-	4e-3	At1g09870	histidine acid phosphatase family protein	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.94	HVSMEb0010F06r2_at	HVSMEb0010F06r2	-	-	5e+0	At5g63220	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.94	Contig8159_at	Contig8159	-	-	4e-21	At1g08490	CPNIFS (CHLOROPLASTIC NIFS-LIKE CYSTEINE DESULFURASE)	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.94	Contig22285_at	Contig22285	-	-	6e-16	At2g04842	EMB2761 (EMBRYO DEFECTIVE 2761)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.5	98.2	GSM213443	Barley seeds with P. aeruginosa PA5021 mutant for 12hr	GSE8618	P. aeruginosa virulent factor to barley
5.6	97.7	GSM372981	genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
5.5	97.6	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.3	96.4	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.0	96.0	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.0	96.0	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.8	95.7	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.8	95.7	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
3.7	95.5	GSM261071	Albina f-17 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.6	95.3	GSM213436	Barley seeds with P. aeruginosa PAO1 for 12hr	GSE8618	P. aeruginosa virulent factor to barley

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage