Co-expression analysis

Gene ID basd0c03_s_at
Gene name
Homology with ArabidopsisSimilar to At3g16770: ATEBP (ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN) (HF=3e+0)
Module size 6 genes
NF 0.59
%ile 81.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6380.30.94basd0c03_s_atbasd0c03--3e+0At3g16770ATEBP (ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN)O.I.H.G.S.X.
0.9198.10.94Contig18670_atContig18670--6e-4At3g26850-O.I.H.G.S.X.
0.7388.70.94Contig11039_atContig11039multiple inositol polyphosphate phosphatase PhyIIa2-4e-3At1g09870histidine acid phosphatase family proteinO.I.H.G.S.X.
0.4762.20.94HVSMEb0010F06r2_atHVSMEb0010F06r2--5e+0At5g63220unknown proteinO.I.H.G.S.X.
0.4053.10.94Contig8159_atContig8159--4e-21At1g08490CPNIFS (CHLOROPLASTIC NIFS-LIKE CYSTEINE DESULFURASE)O.I.H.G.S.X.
0.3545.10.94Contig22285_atContig22285--6e-16At2g04842EMB2761 (EMBRYO DEFECTIVE 2761)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.598.2GSM213443Barley seeds with P. aeruginosa PA5021 mutant for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO
5.697.7GSM372981genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep2GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
5.597.6GSM238434Embryo 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.396.4GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
4.096.0GSM238435Embryo 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.096.0GSM261073Albina f-17 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.895.7GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.895.7GSM282036Malting_steeped_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
3.795.5GSM261071Albina f-17 Hardened rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.695.3GSM213436Barley seeds with P. aeruginosa PAO1 for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage