Co-expression analysis

Gene ID	bags16h04_at
Gene name
Homology with Arabidopsis	Similar to At3g05400: sugar transporter, putative (HF=9e-5)
Module size	6 genes
NF	0.03
%ile	4.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.88	bags16h04_at	bags16h04	-	-	9e-5	At3g05400	sugar transporter, putative	O.I.	H.G.	S.X.	Please select
0.07	5.8	0.92	Contig10431_at	Contig10431	-	-	1e+0	At3g11530	vacuolar protein sorting 55 family protein / VPS55 family protein	O.I.	H.G.	S.X.	Please select
0.07	5.8	0.91	Contig7021_at	Contig7021	-	-	7e-1	At3g05425	unknown protein	O.I.	H.G.	S.X.	Please select
0.06	4.8	0.91	rbaak34i24_s_at	rbaak34i24	-	-	3e-1	At5g59870	HTA6	O.I.	H.G.	S.X.	Please select
0.04	3.4	0.91	Contig1580_x_at	Contig1580	precursor thionin	-	3e-1	At1g28490	SYP61 (SYNTAXIN OF PLANTS 61)	O.I.	H.G.	S.X.	Please select
0.01	1.1	0.91	Contig7030_at	Contig7030	-	-	9e-1	At1g15740	leucine-rich repeat family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.7	98.6	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.9	97.1	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.5	96.7	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.4	96.6	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.3	96.4	GSM419976	Palea_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
4.3	96.4	GSM440964	Control palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
3.9	95.8	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.5	95.1	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.3	94.6	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.2	94.3	GSM261043	before 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis

Inter-species module comparison

A co-expression module including the grape gene, 1613638_at, orthologous to the query gene, bags16h04_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.78	92.6	1613638_at	At3g05400	hypothetical protein LOC100266019	-	4e-11	At1g75220	integral membrane protein, putative	O.I.	H.G.	S.X.	Please select
0.43	61.5	1608521_at	At3g05400	hypothetical protein LOC100253796	-	6e-16	At2g47115	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	50.7	1616873_at	At3g05400	hypothetical protein LOC100241265	-	2e-1	At4g21865	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	39.4	1611492_s_at	At3g05400	hypothetical protein LOC100266220	-	1e+0	At1g49880	Erv1/Alr family protein	O.I.	H.G.	S.X.	Please select
0.30	39.4	1612217_at	At3g05400	hypothetical LOC100246657	-	3e-7	At1g12050	fumarylacetoacetase, putative	O.I.	H.G.	S.X.	Please select
0.23	27.5	1615041_at	At3g05400	hypothetical protein LOC100250228 /// hypothetical protein LOC100255090	-	2e-43	At5g10350	polyadenylate-binding protein family protein / PABP family protein	O.I.	H.G.	S.X.	Please select
0.23	27.5	1607572_s_at	At3g05400	similar to ADP-ribosylation factor	-	2e-117	At1g10630	ATARFA1F (ARABIDOPSIS THALIANA ADP-RIBOSYLATION FACTOR A1F)	O.I.	H.G.	S.X.	Please select
0.21	24.0	1612305_at	At3g05400	hypothetical protein LOC100263408	-	2e-12	At3g15660	GRX4 (GLUTAREDOXIN 4)	O.I.	H.G.	S.X.	Please select
0.19	20.9	1618170_at	At3g05400	hypothetical protein LOC100243463	-	2e-40	At5g60620	phospholipid/glycerol acyltransferase family protein	O.I.	H.G.	S.X.	Please select
0.11	11.3	1609459_at	At3g05400	hypothetical protein LOC100255436	-	9e-11	At4g16450	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage