Co-expression analysis

Gene ID bags16h04_at
Gene name
Homology with ArabidopsisSimilar to At3g05400: sugar transporter, putative (HF=9e-5)
Module size 6 genes
NF 0.03
%ile 4.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.88bags16h04_atbags16h04--9e-5At3g05400sugar transporter, putativeO.I.H.G.S.X.
0.075.80.92Contig10431_atContig10431--1e+0At3g11530vacuolar protein sorting 55 family protein / VPS55 family proteinO.I.H.G.S.X.
0.075.80.91Contig7021_atContig7021--7e-1At3g05425unknown proteinO.I.H.G.S.X.
0.064.80.91rbaak34i24_s_atrbaak34i24--3e-1At5g59870HTA6O.I.H.G.S.X.
0.043.40.91Contig1580_x_atContig1580precursor thionin-3e-1At1g28490SYP61 (SYNTAXIN OF PLANTS 61)O.I.H.G.S.X.
0.011.10.91Contig7030_atContig7030--9e-1At1g15740leucine-rich repeat family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.798.6GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.997.1GSM238413Endosperm 4DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.596.7GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.496.6GSM238414Endosperm 8DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.396.4GSM419976Palea_Rep2GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
4.396.4GSM440964Control palea_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO
3.995.8GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.595.1GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.394.6GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.294.3GSM261043before 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1613638_at, orthologous to the query gene, bags16h04_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7892.61613638_atAt3g05400hypothetical protein LOC100266019-4e-11At1g75220integral membrane protein, putativeO.I.H.G.S.X.
0.4361.51608521_atAt3g05400hypothetical protein LOC100253796-6e-16At2g47115unknown proteinO.I.H.G.S.X.
0.3650.71616873_atAt3g05400hypothetical protein LOC100241265-2e-1At4g21865unknown proteinO.I.H.G.S.X.
0.3039.41611492_s_atAt3g05400hypothetical protein LOC100266220-1e+0At1g49880Erv1/Alr family proteinO.I.H.G.S.X.
0.3039.41612217_atAt3g05400hypothetical LOC100246657-3e-7At1g12050fumarylacetoacetase, putativeO.I.H.G.S.X.
0.2327.51615041_atAt3g05400hypothetical protein LOC100250228 /// hypothetical protein LOC100255090-2e-43At5g10350polyadenylate-binding protein family protein / PABP family proteinO.I.H.G.S.X.
0.2327.51607572_s_atAt3g05400similar to ADP-ribosylation factor-2e-117At1g10630ATARFA1F (ARABIDOPSIS THALIANA ADP-RIBOSYLATION FACTOR A1F)O.I.H.G.S.X.
0.2124.01612305_atAt3g05400hypothetical protein LOC100263408-2e-12At3g15660GRX4 (GLUTAREDOXIN 4)O.I.H.G.S.X.
0.1920.91618170_atAt3g05400hypothetical protein LOC100243463-2e-40At5g60620phospholipid/glycerol acyltransferase family proteinO.I.H.G.S.X.
0.1111.31609459_atAt3g05400hypothetical protein LOC100255436-9e-11At4g16450unknown proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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