Co-expression analysis

Gene ID bags16h04_at
Gene name
Homology with ArabidopsisSimilar to At3g05400: sugar transporter, putative (HF=9e-5)
Module size 6 genes
NF 0.03
%ile 4.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.88bags16h04_atbags16h04--9e-5At3g05400sugar transporter, putativeO.I.H.G.S.X.
0.075.80.92Contig10431_atContig10431--1e+0At3g11530vacuolar protein sorting 55 family protein / VPS55 family proteinO.I.H.G.S.X.
0.075.80.91Contig7021_atContig7021--7e-1At3g05425unknown proteinO.I.H.G.S.X.
0.064.80.91rbaak34i24_s_atrbaak34i24--3e-1At5g59870HTA6O.I.H.G.S.X.
0.043.40.91Contig1580_x_atContig1580precursor thionin-3e-1At1g28490SYP61 (SYNTAXIN OF PLANTS 61)O.I.H.G.S.X.
0.011.10.91Contig7030_atContig7030--9e-1At1g15740leucine-rich repeat family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.798.6GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.997.1GSM238413Endosperm 4DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.596.7GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.496.6GSM238414Endosperm 8DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.396.4GSM419976Palea_Rep2GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
4.396.4GSM440964Control palea_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO
3.995.8GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.595.1GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.394.6GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.294.3GSM261043before 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO

Inter-species module comparison

A co-expression module including the wheat gene, Ta.30759.1.S1_x_at, orthologous to the query gene, bags16h04_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5072.4Ta.30759.1.S1_x_atAt3g05400--1e-2At1g19450integral membrane protein, putative / sugar transporter family proteinO.I.H.G.S.X.
0.5979.8Ta.3888.1.S1_a_atAt3g05400--8e-5At5g54430universal stress protein (USP) family proteinO.I.H.G.S.X.
0.5979.8Ta.9077.1.S1_x_atAt3g05400--3e-19At1g77670aminotransferase class I and II family proteinO.I.H.G.S.X.
0.4767.9Ta.12123.2.S1_x_atAt3g05400--3e+0At1g17730VPS46.1 (VACUOLAR PROTEIN SORTING 46.1)O.I.H.G.S.X.
0.4565.2Ta.18932.1.A1_x_atAt3g05400--1e-19At5g42790PAF1O.I.H.G.S.X.
0.3651.9Ta.12123.1.S1_atAt3g05400--7e-32At5g56280CSN6AO.I.H.G.S.X.
0.3549.8Ta.5773.1.S1_atAt3g05400--7e-53At2g33120SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1)O.I.H.G.S.X.
0.3346.9Ta.10108.2.A1_a_atAt3g05400--2e-3At5g43150unknown proteinO.I.H.G.S.X.
0.2939.2Ta.18932.3.S1_atAt3g05400--2e-4At1g47250PAF2O.I.H.G.S.X.
0.2735.6Ta.1531.2.S1_x_atAt3g05400--3e+0At5g39230transcription initiation factor-relatedO.I.H.G.S.X.
0.2735.6Ta.9090.1.S1_atAt3g05400--2e+0At2g30410KIS (KIESEL)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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