Co-expression analysis

Gene ID bags16h04_at
Gene name
Homology with ArabidopsisSimilar to At3g05400: sugar transporter, putative (HF=9e-5)
Module size 6 genes
NF 0.03
%ile 4.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.88bags16h04_atbags16h04--9e-5At3g05400sugar transporter, putativeO.I.H.G.S.X.
0.075.80.92Contig10431_atContig10431--1e+0At3g11530vacuolar protein sorting 55 family protein / VPS55 family proteinO.I.H.G.S.X.
0.075.80.91Contig7021_atContig7021--7e-1At3g05425unknown proteinO.I.H.G.S.X.
0.064.80.91rbaak34i24_s_atrbaak34i24--3e-1At5g59870HTA6O.I.H.G.S.X.
0.043.40.91Contig1580_x_atContig1580precursor thionin-3e-1At1g28490SYP61 (SYNTAXIN OF PLANTS 61)O.I.H.G.S.X.
0.011.10.91Contig7030_atContig7030--9e-1At1g15740leucine-rich repeat family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.798.6GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.997.1GSM238413Endosperm 4DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.596.7GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.496.6GSM238414Endosperm 8DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.396.4GSM419976Palea_Rep2GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
4.396.4GSM440964Control palea_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO
3.995.8GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.595.1GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.394.6GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.294.3GSM261043before 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.17771.1.A1_at, orthologous to the query gene, bags16h04_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6791.1PtpAffx.17771.1.A1_atAt3g05400hypothetical protein-4e-13At1g75220integral membrane protein, putativeO.I.H.G.S.X.
0.5582.2PtpAffx.5406.1.A1_a_atAt3g05400hypothetical protein-1e-10At2g15290TIC21 (TRANSLOCON AT INNER MEMBRANE OF CHLOROPLASTS 21)O.I.H.G.S.X.
0.5380.5PtpAffx.224342.1.S1_atAt3g05400hypothetical protein-2e-17At3g53700MEE40 (maternal effect embryo arrest 40)O.I.H.G.S.X.
0.5078.6PtpAffx.202616.1.S1_atAt3g05400ABC transporter family protein-8e-27At1g19800TGD1 (TRIGALACTOSYLDIACYLGLYCEROL 1)O.I.H.G.S.X.
0.3052.0Ptp.4121.1.S1_s_atAt3g05400glutathione-dependent formaldehyde dehydrogenase-1e-44At5g43940HOT5 (sensitive to hot temperatures 5)O.I.H.G.S.X.
0.2238.3PtpAffx.54604.1.S1_atAt3g05400hypothetical protein-1e-7At4g12060Clp amino terminal domain-containing proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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