Co-expression analysis

Gene ID	ZmAffx.999.1.S1_at
Gene name	hypothetical protein LOC100279401
Homology with Arabidopsis	Similar to At4g00810: 60S acidic ribosomal protein P1 (RPP1B) (HF=5e-2)
Module size	11 genes
NF	0.37
%ile	39.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	77.8	0.98	ZmAffx.999.1.S1_at	AI881222	hypothetical protein LOC100279401	-	5e-2	At4g00810	60S acidic ribosomal protein P1 (RPP1B)	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.99	ZmAffx.566.1.A1_at	AI714636	-	-	2e-1	At5g05610	AL1 (ALFIN-LIKE 1)	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.99	Zm.14107.2.A1_at	AI770963	-	-	8e-1	At3g56880	VQ motif-containing protein	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.99	Zm.12535.1.S1_at	AY105384.1	hypothetical protein LOC100278440	-	9e+0	At5g01390	DNAJ heat shock protein, putative	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.99	ZmAffx.734.1.A1_at	AI740044	-	-	1e+1	At5g01670	aldose reductase, putative	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.99	Zm.4359.2.A1_x_at	AI795776	EMB2756	-	2e+0	At5g52160	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.99	ZmAffx.224.1.A1_at	AI670233	-	-	8e-1	At5g06770	KH domain-containing protein / zinc finger (CCCH type) family protein	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.99	Zm.14784.1.A1_at	BG841481	-	-	3e+0	At3g01175	-	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.99	Zm.13162.1.A1_at	CO521967	-	-	9e-3	At3g02040	SRG3 (senescence-related gene 3)	O.I.	H.G.	S.X.	Please select
0.30	29.8	0.99	Zm.9891.1.A1_at	BM350582	-	-	1e+0	At5g27290	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	14.2	0.99	Zm.13670.1.A1_at	AY107037.1	hypothetical protein LOC100276497	-	3e-3	At5g34930	arogenate dehydrogenase	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
25.7	99.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.6	99.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.1	99.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.8	99.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.1	99.2	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.0	99.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.0	99.2	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.3	99.0	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.6	99.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.3	96.1	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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