Co-expression analysis

Gene ID ZmAffx.993.1.A1_at
Gene name AIR12
Homology with ArabidopsisSimilar to Atmg01350: - (HF=3e+0)
Module size 6 genes
NF 0.08
%ile 4.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5976.10.98ZmAffx.993.1.A1_atAI855127AIR12-3e+0Atmg01350-O.I.H.G.S.X.
0.147.70.98Zm.6312.1.A1_atCF043412--1e+0At3g20557unknown proteinO.I.H.G.S.X.
0.125.90.98ZmAffx.534.1.A1_atAI711770ubiquitin-conjugating enzyme E2 E3-3e+0At3g50651unknown proteinO.I.H.G.S.X.
0.104.60.99ZmAffx.918.1.A1_atAI782957--8e-1At3g06750hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.072.90.98Zm.9602.1.A1_atBM339194--3e-1At2g28940protein kinase family proteinO.I.H.G.S.X.
0.031.10.98Zm.4852.1.A1_atCO527893hypothetical protein LOC100192969-3e-2At4g39000AtGH9B17 (Arabidopsis thaliana glycosyl hydrolase 9B17)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.598.6GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.896.6GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.596.3GSM320471protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.195.9GSM202320B73 19 day after pollination embryo tissue, biological replicate 3GSE8179Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo dataLink to GEO
4.095.8GSM202310B73 19 day after pollination embryo tissue, biological replicate 1GSE8179Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo dataLink to GEO
3.895.5GSM320461protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.895.5GSM202315B73 19 day after pollination embryo tissue, biological replicate 2GSE8179Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo dataLink to GEO
3.895.5GSM320468protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.494.9GSM202298B73 immature ear tissue, biological replicate 2GSE8176Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear dataLink to GEO
3.294.5GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

A co-expression module including the barley gene, Contig9093_at, orthologous to the query gene, ZmAffx.993.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5774.9Contig9093_atAtmg01350--8e+0At3g09700DNAJ heat shock N-terminal domain-containing proteinO.I.H.G.S.X.
0.8092.5Contig5680_atAtmg01350--1e-1At4g14540NF-YB3 (NUCLEAR FACTOR Y, SUBUNIT B3)O.I.H.G.S.X.
0.6178.7Contig10970_atAtmg01350--2e-10At4g00290mechanosensitive ion channel domain-containing protein / MS ion channel domain-containing proteinO.I.H.G.S.X.
0.4661.0Contig10065_atAtmg01350--3e+0Atmg01260-O.I.H.G.S.X.
0.4458.9Contig10584_atAtmg01350--6e-1At3g09830protein kinase, putativeO.I.H.G.S.X.
0.4053.1Contig11726_atAtmg01350--9e-10At4g33140unknown proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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