Co-expression analysis

Gene ID	ZmAffx.993.1.A1_at
Gene name	AIR12
Homology with Arabidopsis	Similar to Atmg01350: - (HF=3e+0)
Module size	6 genes
NF	0.08
%ile	4.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	76.1	0.98	ZmAffx.993.1.A1_at	AI855127	AIR12	-	3e+0	Atmg01350	-	O.I.	H.G.	S.X.	Please select
0.14	7.7	0.98	Zm.6312.1.A1_at	CF043412	-	-	1e+0	At3g20557	unknown protein	O.I.	H.G.	S.X.	Please select
0.12	5.9	0.98	ZmAffx.534.1.A1_at	AI711770	ubiquitin-conjugating enzyme E2 E3	-	3e+0	At3g50651	unknown protein	O.I.	H.G.	S.X.	Please select
0.10	4.6	0.99	ZmAffx.918.1.A1_at	AI782957	-	-	8e-1	At3g06750	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.07	2.9	0.98	Zm.9602.1.A1_at	BM339194	-	-	3e-1	At2g28940	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.03	1.1	0.98	Zm.4852.1.A1_at	CO527893	hypothetical protein LOC100192969	-	3e-2	At4g39000	AtGH9B17 (Arabidopsis thaliana glycosyl hydrolase 9B17)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.5	98.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.8	96.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.5	96.3	GSM320471	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.1	95.9	GSM202320	B73 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
4.0	95.8	GSM202310	B73 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
3.8	95.5	GSM320461	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.8	95.5	GSM202315	B73 19 day after pollination embryo tissue, biological replicate 2	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
3.8	95.5	GSM320468	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.4	94.9	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.2	94.5	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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