Co-expression analysis

Gene ID ZmAffx.992.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At2g02570: nucleic acid binding (HF=8e-1)
Module size 27 genes
NF 0.29
%ile 25.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9699.80.99ZmAffx.992.1.A1_atAI855055--8e-1At2g02570nucleic acid bindingO.I.H.G.S.X.
0.3945.60.99Zm.6017.1.A1_atAI666208hypothetical protein LOC100274747 /// hypothetical protein LOC100277021-2e+0At4g08230glycine-rich proteinO.I.H.G.S.X.
0.3945.60.98Zm.12483.1.A1_atAI396412hypothetical protein LOC100273621-5e+0At5g25540CID6 (CTC-Interacting Domain 6)O.I.H.G.S.X.
0.3641.30.99Zm.6719.1.A1_atAI395930--8e-1At4g01960unknown proteinO.I.H.G.S.X.
0.3641.30.99ZmAffx.1074.1.A1_atAI947680--1e+1At2g42210mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family proteinO.I.H.G.S.X.
0.3437.20.99Zm.11596.1.A1_atBM379205--7e-2At2g46308unknown proteinO.I.H.G.S.X.
0.3336.00.99Zm.4926.1.A1_atAA979783propionyl-CoA carboxylase-2e-7At1g01770unknown proteinO.I.H.G.S.X.
0.3336.00.99ZmAffx.1046.1.A1_atAI881792--8e-1At1g79160unknown proteinO.I.H.G.S.X.
0.3233.40.99Zm.4166.1.A1_atBG841131hypothetical protein LOC100191831-1e+0At1g17145protein binding / zinc ion bindingO.I.H.G.S.X.
0.3131.60.99Zm.13740.1.A1_atAW330707--2e-16At2g29140APUM3 (Arabidopsis Pumilio 3)O.I.H.G.S.X.
0.3029.80.99ZmAffx.118.1.S1_atAI665643--8e-1At5g59470PQ-loop repeat family protein / transmembrane family proteinO.I.H.G.S.X.
0.2928.10.99Zm.6376.1.A1_atAY106982.1--2e-1At1g68560XYL1 (ALPHA-XYLOSIDASE 1)O.I.H.G.S.X.
0.2928.10.99Zm.17257.1.A1_atCF624421hypothetical protein LOC100273469-5e-13At2g41540GPDHC1O.I.H.G.S.X.
0.2828.10.99ZmAffx.563.1.A1_atAI714606--3e+0At5g67560ATARLA1D (ADP-ribosylation factor-like A1D)O.I.H.G.S.X.
0.2724.60.99Zm.8632.1.A1_atBM268513--5e+0At3g55672-O.I.H.G.S.X.
0.2724.60.99Zm.13054.1.A1_atCA403903hypothetical protein LOC100273794-9e-6At2g43080AT-P4H-1 (A. THALIANA P4H ISOFORM 1)O.I.H.G.S.X.
0.2724.60.99Zm.3959.1.A1_atAY109274.1hypothetical protein LOC100193090-4e-21At1g34020transporter-relatedO.I.H.G.S.X.
0.2521.30.99Zm.11196.1.A1_atBM379862hypothetical protein LOC100275201-1e+0At5g64160unknown proteinO.I.H.G.S.X.
0.2521.30.99Zm.15546.1.A1_atCD219276hypothetical protein LOC100276392-1e+0At5g01734unknown proteinO.I.H.G.S.X.
0.2521.30.99ZmAffx.571.1.S1_atAI714687Hypothetical protein LOC100191288-3e+0At5g20230ATBCB (ARABIDOPSIS BLUE-COPPER-BINDING PROTEIN)O.I.H.G.S.X.
0.2419.80.99Zm.41.1.S1_atAI600908calcium dependent protein kinase1-1e-16At2g46700calcium-dependent protein kinase, putative / CDPK, putativeO.I.H.G.S.X.
0.2318.60.99Zm.13669.2.A1_atBM350396--2e-9At4g02630protein kinase family proteinO.I.H.G.S.X.
0.2115.50.99ZmAffx.1040.1.A1_atAI881777--3e+0At1g49590formin-binding protein-relatedO.I.H.G.S.X.
0.2014.20.99ZmAffx.190.1.A1_atAI881316--5e-2At3g56910PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5)O.I.H.G.S.X.
0.1811.60.99Zm.10332.1.A1_atBQ048110--2e+0At3g28990unknown proteinO.I.H.G.S.X.
0.1710.61.00Zm.12405.1.A1_atBM381554alpha/beta hydrolase fold-2e+0At1g64340unknown proteinO.I.H.G.S.X.
0.115.30.99ZmAffx.889.1.S1_atAI770841pre-mRNA processing factor-8e-7At2g40650pre-mRNA splicing factor PRP38 family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.898.8GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.698.7GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.398.7GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.298.6GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.898.6GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.398.5GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.697.1GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.497.0GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.096.7GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.696.4GSM320458protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



Back to the CoP portal site

Back to the KAGIANA project homepage