Co-expression analysis

Gene ID	ZmAffx.985.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At4g36900: RAP2.10 (related to AP2 10) (HF=1e+1)
Module size	20 genes
NF	0.25
%ile	20.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.95	99.6	0.98	ZmAffx.985.1.A1_at	AI834468	-	-	1e+1	At4g36900	RAP2.10 (related to AP2 10)	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.99	Zm.9930.1.A1_at	BM333380	-	-	1e+0	At5g37770	TCH2 (TOUCH 2)	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.99	Zm.9086.1.A1_at	AI649547	hypothetical protein LOC100280062	-	7e-2	At1g08160	harpin-induced protein-related / HIN1-related / harpin-responsive protein-related	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.99	ZmAffx.913.1.A1_at	AI770960	-	-	8e-1	At4g20460	NAD-dependent epimerase/dehydratase family protein	O.I.	H.G.	S.X.	Please select
0.28	28.1	0.99	ZmAffx.837.1.S1_at	AI770584	-	-	3e-9	Atmg00690	-	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.99	Zm.1089.1.A1_at	CF628396	hypothetical protein LOC100280051	-	7e+0	At5g42850	-	O.I.	H.G.	S.X.	Please select
0.26	22.7	0.99	Zm.11660.1.A1_at	BM379753	-	-	2e-9	At5g36880	acetyl-CoA synthetase, putative / acetate-CoA ligase, putative	O.I.	H.G.	S.X.	Please select
0.26	22.7	0.99	Zm.5535.1.S1_at	AY108314.1	Protein kinase-like	-	1e-52	At3g62220	serine/threonine protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.26	22.7	0.99	Zm.13658.1.A1_at	AY107148.1	hypothetical protein LOC100193262	-	1e+0	At3g50350	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	22.7	0.98	Zm.6963.1.A1_at	BG842780	glutathione S-transferase theta-1	-	2e-3	At5g41220	ATGSTT3 (GLUTATHIONE S-TRANSFERASE THETA 3)	O.I.	H.G.	S.X.	Please select
0.25	21.3	0.99	ZmAffx.895.1.A1_at	AI770878	-	-	8e-4	At3g56370	leucine-rich repeat transmembrane protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.23	18.6	0.99	ZmAffx.831.1.S1_at	AI770541	hypothetical protein LOC100191667	-	2e-1	At1g21900	emp24/gp25L/p24 family protein	O.I.	H.G.	S.X.	Please select
0.23	18.6	0.99	Zm.6557.1.S1_at	CF635193	-	-	4e-34	At1g10290	ADL6 (DYNAMIN-LIKE PROTEIN 6)	O.I.	H.G.	S.X.	Please select
0.23	18.6	0.99	Zm.10507.1.S1_at	CA827194	-	-	9e-6	At5g53905	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	16.9	0.98	ZmAffx.957.1.A1_at	AI833524	-	-	3e+0	At2g40995	-	O.I.	H.G.	S.X.	Please select
0.21	15.5	0.99	Zm.8181.1.A1_at	BE643624	hypothetical protein LOC100193608	-	2e-1	At1g04350	2-oxoglutarate-dependent dioxygenase, putative	O.I.	H.G.	S.X.	Please select
0.21	15.5	0.99	Zm.12300.1.A1_at	CF626520	ruBisCO large subunit-binding protein subunit alpha	-	1e-37	At2g28000	CPN60A (CHAPERONIN-60ALPHA)	O.I.	H.G.	S.X.	Please select
0.18	11.6	0.99	ZmAffx.714.1.S1_at	AI739758	-	-	1e+1	At5g66930	unknown protein	O.I.	H.G.	S.X.	Please select
0.18	11.6	0.99			-	-				O.I.	H.G.	S.X.	Please select
0.10	4.6	0.99	ZmAffx.108.1.S1_at	AI665554	Hypothetical protein LOC100191707	-	8e-1	At5g39640	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
16.9	99.1	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.4	98.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.4	98.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.2	98.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.5	98.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.6	98.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.0	98.5	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.4	98.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.3	98.2	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.8	93.5	GSM320463	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage