Co-expression analysis

Gene ID	ZmAffx.962.1.A1_at
Gene name	hypothetical protein LOC100275523
Homology with Arabidopsis	Similar to At1g64680: unknown protein (HF=3e-22)
Module size	6 genes
NF	0.58
%ile	78.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	76.1	0.99	ZmAffx.962.1.A1_at	AI833777	hypothetical protein LOC100275523	-	3e-22	At1g64680	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.99	ZmAffx.533.1.S1_at	AI711769	-	-	8e-1	At5g11790	Ndr family protein	O.I.	H.G.	S.X.	Please select
0.61	79.5	0.99	ZmAffx.1198.1.A1_at	BE056195	-	-	2e-1	At1g75040	PR5 (PATHOGENESIS-RELATED GENE 5)	O.I.	H.G.	S.X.	Please select
0.56	74.4	0.99	Zm.3964.1.A1_a_at	AF205603.1	ferric-chelate reductase (NADH)2	-	1e-17	At5g17770	ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1)	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.99	Zm.10593.1.A1_at	BM380000	hypothetical protein LOC100194168	-	1e+0	At3g55350	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.99	Zm.18012.1.A1_at	CK827313	-	-	2e-3	At5g48950	thioesterase family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.7	98.5	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.2	98.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1	98.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.2	98.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.0	98.2	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5	98.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.0	98.0	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.2	97.8	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.0	94.0	GSM375788	Deep-sowing 10d treatment Control, biological rep1	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.130150.2.A1_at, orthologous to the query gene, ZmAffx.962.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	TaAffx.130150.2.A1_at	At1g64680	-	-	4e+0	At1g02590	aldehyde oxidase, putative	O.I.	H.G.	S.X.	Please select
0.33	46.9	Ta.3028.1.A1_at	At1g64680	-	-	2e-3	At5g05660	ATNFXL2	O.I.	H.G.	S.X.	Please select
0.31	42.7	TaAffx.80013.1.S1_at	At1g64680	-	-	1e+0	At4g18335	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	32.1	Ta.12360.1.A1_at	At1g64680	-	-	4e+0	At1g70220	unknown protein	O.I.	H.G.	S.X.	Please select
0.07	8.6	TaAffx.61855.2.S1_at	At1g64680	-	-	4e+0	At3g44150	unknown protein	O.I.	H.G.	S.X.	Please select
0.07	8.6	TaAffx.38158.4.S1_x_at	At1g64680	-	-	1e-3	At2g44330	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

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