CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID ZmAffx.962.1.A1_at

Gene name hypothetical protein LOC100275523
Homology with Arabidopsis Similar to At1g64680: unknown protein (HF=3e-22)

Module size 6 genes

NF 0.58

%ile 78.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.59 76.1 0.99 ZmAffx.962.1.A1_at AI833777 hypothetical protein LOC100275523 - 3e-22 At1g64680 unknown protein O.I. H.G. S.X.
0.67 85.8 0.99 ZmAffx.533.1.S1_at AI711769 - - 8e-1 At5g11790 Ndr family protein O.I. H.G. S.X.
0.61 79.5 0.99 ZmAffx.1198.1.A1_at BE056195 - - 2e-1 At1g75040 PR5 (PATHOGENESIS-RELATED GENE 5) O.I. H.G. S.X.
0.56 74.4 0.99 Zm.3964.1.A1_a_at AF205603.1 ferric-chelate reductase (NADH)2 - 1e-17 At5g17770 ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1) O.I. H.G. S.X.
0.46 58.4 0.99 Zm.10593.1.A1_at BM380000 hypothetical protein LOC100194168 - 1e+0 At3g55350 unknown protein O.I. H.G. S.X.
0.33 36.0 0.99 Zm.18012.1.A1_at CK827313 - - 2e-3 At5g48950 thioesterase family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.7 98.5 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.2 98.4 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1 98.4 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.2 98.2 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.0 98.2 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5 98.1 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.0 98.0 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7 97.9 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.2 97.8 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.0 94.0 GSM375788 Deep-sowing 10d treatment Control, biological rep1 GSE15048 Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition

Inter-species module comparison

A co-expression module including the barley gene, Contig23045_at, orthologous to the query gene, ZmAffx.962.1.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.77 90.8 Contig23045_at At1g64680 - - 3e-13 At1g64680 unknown protein O.I. H.G. S.X.
0.77 90.8 Contig10383_at At1g64680 - - 6e-4 At2g22540 SVP (SHORT VEGETATIVE PHASE) O.I. H.G. S.X.
0.73 88.7 Contig20103_at At1g64680 - - 4e+0 At5g20460 unknown protein O.I. H.G. S.X.
0.73 88.7 Contig10382_s_at At1g64680 - - 6e-38 At5g45190 cyclin family protein O.I. H.G. S.X.
0.69 85.5 HP01G01w_s_at At1g64680 - - 1e+1 At5g45469 unknown protein O.I. H.G. S.X.
0.67 84.7 Contig19806_at At1g64680 - - 1e+0 At1g67080 ABA4 (abscisic acid (ABA)-deficient 4) O.I. H.G. S.X.
0.59 75.8 Contig8761_at At1g64680 - - 3e-1 At5g58010 basic helix-loop-helix (bHLH) family protein O.I. H.G. S.X.
0.58 74.9 Contig7156_at At1g64680 - - 3e+0 At1g11470 - O.I. H.G. S.X.
0.57 74.9 Contig1646_s_at At1g64680 - - 9e-19 At5g37600 ATGSR1 O.I. H.G. S.X.
0.57 74.9 HV_CEb0017C21r2_s_at At1g64680 - - 9e+0 At4g05180 PSBQ-2 O.I. H.G. S.X.
0.54 70.3 Contig10380_at At1g64680 - - 4e-1 At1g17880 nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative O.I. H.G. S.X.
0.50 66.9 Contig19674_at At1g64680 - - 9e-2 At3g25600 calcium ion binding O.I. H.G. S.X.
0.49 63.7 Contig12046_at At1g64680 - - 6e+0 At3g14060 unknown protein O.I. H.G. S.X.
0.46 61.0 Contig9147_at At1g64680 - - 7e+0 At5g38630 ACYB-1 O.I. H.G. S.X.
0.45 59.3 Contig6213_s_at At1g64680 - - 8e-4 At1g05850 POM1 (POM-POM1) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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