Co-expression analysis

Gene ID	ZmAffx.96.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At4g39130: dehydrin family protein (HF=1e+1)
Module size	6 genes
NF	0.40
%ile	46.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.95	ZmAffx.96.1.S1_at	AI665410	-	-	1e+1	At4g39130	dehydrin family protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.95	ZmAffx.960.1.A1_at	AI833639	hypothetical protein LOC100273178	-	3e+0	At2g19640	ASHR2 (ASH1-RELATED PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.95	ZmAffx.134.1.S1_at	AI667702	-	-	3e+0	At3g53010	-	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.95	Zm.622.1.S1_at	AF342809.1	tonoplast membrane integral protein ZmTIP3-2	-	4e-2	At2g01340	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.95	Zm.5976.2.S1_x_at	BG265782	-	-	3e+0	At5g40080	60S ribosomal protein-related	O.I.	H.G.	S.X.	Please select
0.22	16.9	0.95	ZmAffx.195.1.S1_at	AI668458	-	-	1e+1	At5g21005	unknown protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.4	98.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.2	98.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.2	97.8	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.7	97.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.3	97.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.7	97.2	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.0	96.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.9	96.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.6	95.2	GSM206305	Right pulvinus control polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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