CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID ZmAffx.955.1.S1_at

Gene name
Homology with Arabidopsis Similar to At2g47480: unknown protein (HF=8e-1)

Module size 43 genes

NF 0.39

%ile 42.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.98 100.0 0.98 ZmAffx.955.1.S1_at AI833505 - - 8e-1 At2g47480 unknown protein O.I. H.G. S.X.
0.57 75.1 0.99 Zm.8311.2.A1_a_at BM073622 - - 4e+0 At4g23090 unknown protein O.I. H.G. S.X.
0.50 65.7 0.99 ZmAffx.832.1.S1_at AI770560 hypothetical protein LOC100274340 - 5e-2 At5g51990 CBF4 (C- REPEAT-BINDING FACTOR 4) O.I. H.G. S.X.
0.49 61.9 0.99 ZmAffx.843.1.S1_at AI770603 - - 2e-1 At1g69820 GGT3 (GAMMA-GLUTAMYL TRANSPEPTIDASE 3) O.I. H.G. S.X.
0.49 61.9 0.99 Zm.9940.1.A1_at BM339055 - - 3e-2 At5g26860 LON1 (LON PROTEASE 1) O.I. H.G. S.X.
0.47 59.9 0.99 Zm.4368.1.S1_at CA404879 hypothetical protein LOC100217171 - 2e-21 At3g28900 60S ribosomal protein L34 (RPL34C) O.I. H.G. S.X.
0.47 59.9 0.99 ZmAffx.865.1.S1_at AI770727 hypothetical protein LOC100191495 - 3e+0 At5g26830 threonyl-tRNA synthetase / threonine--tRNA ligase (THRRS) O.I. H.G. S.X.
0.47 59.9 0.99 Zm.13941.1.S1_at CB380998 hypothetical protein LOC100277314 - 4e-5 At4g29735 unknown protein O.I. H.G. S.X.
0.46 58.4 0.98 Zm.1611.1.A1_at AW787466 - - 5e+0 At2g39790 mitochondrial glycoprotein family protein / MAM33 family protein O.I. H.G. S.X.
0.45 56.4 0.99 Zm.13588.1.A1_at AY107800.1 - - 1e+0 At4g34670 40S ribosomal protein S3A (RPS3aB) O.I. H.G. S.X.
0.45 56.4 0.99 Zm.11997.1.A1_at BM382529 - - 4e+0 At5g67010 AP2 domain-containing transcription factor, putative O.I. H.G. S.X.
0.43 52.8 0.98 Zm.1039.3.A1_a_at AI677375 Hypothetical protein LOC100194359 - 3e+0 At4g18580 unknown protein O.I. H.G. S.X.
0.42 51.3 0.99 Zm.16320.1.S1_at CO526259 hypothetical protein LOC100193231 - 3e-6 At3g19910 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.42 51.3 0.99 Zm.1686.1.A1_at CF630564 hypothetical protein LOC100193643 - 5e-5 At1g05620 URH2 (URIDINE-RIBOHYDROLASE 2) O.I. H.G. S.X.
0.42 51.3 0.99 Zm.18954.1.A1_at CO533875 hypothetical protein LOC100273399 - 2e+0 At1g68960 unknown protein O.I. H.G. S.X.
0.41 49.7 0.98 Zm.9334.1.A1_at BM268129 - - 2e+1 At5g28642 unknown protein O.I. H.G. S.X.
0.41 49.7 0.99 Zm.6435.1.A1_at BM078602 hypothetical protein LOC100217154 - 1e-5 At2g22370 unknown protein O.I. H.G. S.X.
0.41 49.7 0.99 ZmAffx.13.1.S1_s_at AY372245.1 cellulose synthase 11 - 2e-61 At4g18780 IRX1 (IRREGULAR XYLEM 1) O.I. H.G. S.X.
0.41 49.7 0.99 Zm.5028.1.S1_at AY103976.1 splicing factor, arginine/serine-rich 12 - 1e+0 At4g23770 unknown protein O.I. H.G. S.X.
0.40 48.5 0.99 Zm.19002.1.A1_at CO525625 hypothetical protein LOC100279879 - 7e+0 At5g35290 unknown protein O.I. H.G. S.X.
0.40 48.5 0.99 ZmAffx.550.1.S1_at AI712203 - - 3e+0 At5g47410 unknown protein O.I. H.G. S.X.
0.39 45.6 0.99 Zm.206.4.A1_s_at CF048188 ribosomal protein S21 /// 40S ribosomal subunit protein S21 - 4e-16 At3g53890 40S ribosomal protein S21 (RPS21B) O.I. H.G. S.X.
0.39 45.6 0.99 Zm.1247.1.S1_at BE575051 EARLY flowering 4 protein - 4e+0 At3g17570 F-box family protein O.I. H.G. S.X.
0.38 44.2 0.99 Zm.13975.1.A1_at CK985455 carbonyl reductase 3 - 6e-1 At4g20880 ethylene-responsive nuclear protein / ethylene-regulated nuclear protein (ERT2) O.I. H.G. S.X.
0.38 44.2 0.99 ZmAffx.781.1.A1_at AI746268 - - 1e+1 At4g37450 AGP18 (ARABINOGALACTAN PROTEIN 18) O.I. H.G. S.X.
0.37 42.3 0.99 ZmAffx.1178.1.S1_at AW927494 hypothetical protein LOC100272910 - 3e+0 At2g18400 ribosomal protein L6 family protein O.I. H.G. S.X.
0.36 41.3 0.99 Zm.13538.1.A1_at CO529570 - - 4e-5 At3g22660 rRNA processing protein-related O.I. H.G. S.X.
0.35 38.9 0.99 ZmAffx.915.1.S1_at AI770972 - - 8e+0 Atmg01050 - O.I. H.G. S.X.
0.35 38.9 0.99 Zm.8097.1.A1_at BM336868 - - 2e+0 At3g21940 receptor protein kinase-related O.I. H.G. S.X.
0.35 38.9 0.99 ZmAffx.976.1.A1_at AI833931 - - 1e-2 At4g23880 unknown protein O.I. H.G. S.X.
0.35 38.9 0.99 Zm.327.1.S1_at AB042270.1 histidine kinase 1 - 3e-14 At2g01830 WOL (WOODEN LEG) O.I. H.G. S.X.
0.34 37.2 1.00 Zm.4171.1.A1_at BG841769 isoamyl acetate-hydrolyzing esterase - 3e+0 At1g69190 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase/ dihydropteroate synthase O.I. H.G. S.X.
0.33 36.0 0.99 ZmAffx.1060.1.A1_at AI881420 - - 1e-9 At1g51570 C2 domain-containing protein O.I. H.G. S.X.
0.33 36.0 0.99 Zm.6275.1.S1_a_at AF540907.1 benzoxazin6 - 7e-1 At1g06640 2-oxoglutarate-dependent dioxygenase, putative O.I. H.G. S.X.
0.32 33.4 0.99 Zm.15242.1.A1_at BM340075 - - 1e+1 At3g16712 unknown protein O.I. H.G. S.X.
0.32 33.4 0.99 ZmAffx.1086.1.S1_at AW018229 - - 3e+0 At2g01755 unknown protein O.I. H.G. S.X.
0.31 31.6 0.99 ZmAffx.1051.1.S1_at AI881809 hypothetical protein LOC100272557 - 2e-1 At3g01790 ribosomal protein L13 family protein O.I. H.G. S.X.
0.30 29.8 0.99 ZmAffx.525.1.S1_at AI711680 - - 8e-1 At5g23170 protein kinase family protein O.I. H.G. S.X.
0.30 29.8 0.99 Zm.14617.1.A1_at BM080453 Hypothetical protein LOC100191188 - 2e+0 At2g33130 RALFL18 (ralf-like 18) O.I. H.G. S.X.
0.28 28.1 0.99 Zm.2805.1.A1_at AW352682 hypothetical protein LOC100274443 - 5e+0 At4g13266 unknown protein O.I. H.G. S.X.
0.27 24.6 0.99 Zm.11787.1.A1_a_at BM380772 - - 6e+0 At5g17523 - O.I. H.G. S.X.
0.27 24.6 0.99 Zm.4194.1.A1_at AI861230 hypothetical protein LOC100276018 - 3e+0 At1g71180 6-phosphogluconate dehydrogenase NAD-binding domain-containing protein O.I. H.G. S.X.
0.21 15.5 0.99 Zm.14092.1.S1_at CA399825 mitotic checkpoint protein - 8e-4 At5g49880 mitotic checkpoint family protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.98	100.0	0.98	ZmAffx.955.1.S1_at	AI833505	-	-	8e-1	At2g47480	unknown protein	O.I.	H.G.	S.X.
0.57	75.1	0.99	Zm.8311.2.A1_a_at	BM073622	-	-	4e+0	At4g23090	unknown protein	O.I.	H.G.	S.X.
0.50	65.7	0.99	ZmAffx.832.1.S1_at	AI770560	hypothetical protein LOC100274340	-	5e-2	At5g51990	CBF4 (C- REPEAT-BINDING FACTOR 4)	O.I.	H.G.	S.X.
0.49	61.9	0.99	ZmAffx.843.1.S1_at	AI770603	-	-	2e-1	At1g69820	GGT3 (GAMMA-GLUTAMYL TRANSPEPTIDASE 3)	O.I.	H.G.	S.X.
0.49	61.9	0.99	Zm.9940.1.A1_at	BM339055	-	-	3e-2	At5g26860	LON1 (LON PROTEASE 1)	O.I.	H.G.	S.X.
0.47	59.9	0.99	Zm.4368.1.S1_at	CA404879	hypothetical protein LOC100217171	-	2e-21	At3g28900	60S ribosomal protein L34 (RPL34C)	O.I.	H.G.	S.X.
0.47	59.9	0.99	ZmAffx.865.1.S1_at	AI770727	hypothetical protein LOC100191495	-	3e+0	At5g26830	threonyl-tRNA synthetase / threonine--tRNA ligase (THRRS)	O.I.	H.G.	S.X.
0.47	59.9	0.99	Zm.13941.1.S1_at	CB380998	hypothetical protein LOC100277314	-	4e-5	At4g29735	unknown protein	O.I.	H.G.	S.X.
0.46	58.4	0.98	Zm.1611.1.A1_at	AW787466	-	-	5e+0	At2g39790	mitochondrial glycoprotein family protein / MAM33 family protein	O.I.	H.G.	S.X.
0.45	56.4	0.99	Zm.13588.1.A1_at	AY107800.1	-	-	1e+0	At4g34670	40S ribosomal protein S3A (RPS3aB)	O.I.	H.G.	S.X.
0.45	56.4	0.99	Zm.11997.1.A1_at	BM382529	-	-	4e+0	At5g67010	AP2 domain-containing transcription factor, putative	O.I.	H.G.	S.X.
0.43	52.8	0.98	Zm.1039.3.A1_a_at	AI677375	Hypothetical protein LOC100194359	-	3e+0	At4g18580	unknown protein	O.I.	H.G.	S.X.
0.42	51.3	0.99	Zm.16320.1.S1_at	CO526259	hypothetical protein LOC100193231	-	3e-6	At3g19910	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.42	51.3	0.99	Zm.1686.1.A1_at	CF630564	hypothetical protein LOC100193643	-	5e-5	At1g05620	URH2 (URIDINE-RIBOHYDROLASE 2)	O.I.	H.G.	S.X.
0.42	51.3	0.99	Zm.18954.1.A1_at	CO533875	hypothetical protein LOC100273399	-	2e+0	At1g68960	unknown protein	O.I.	H.G.	S.X.
0.41	49.7	0.98	Zm.9334.1.A1_at	BM268129	-	-	2e+1	At5g28642	unknown protein	O.I.	H.G.	S.X.
0.41	49.7	0.99	Zm.6435.1.A1_at	BM078602	hypothetical protein LOC100217154	-	1e-5	At2g22370	unknown protein	O.I.	H.G.	S.X.
0.41	49.7	0.99	ZmAffx.13.1.S1_s_at	AY372245.1	cellulose synthase 11	-	2e-61	At4g18780	IRX1 (IRREGULAR XYLEM 1)	O.I.	H.G.	S.X.
0.41	49.7	0.99	Zm.5028.1.S1_at	AY103976.1	splicing factor, arginine/serine-rich 12	-	1e+0	At4g23770	unknown protein	O.I.	H.G.	S.X.
0.40	48.5	0.99	Zm.19002.1.A1_at	CO525625	hypothetical protein LOC100279879	-	7e+0	At5g35290	unknown protein	O.I.	H.G.	S.X.
0.40	48.5	0.99	ZmAffx.550.1.S1_at	AI712203	-	-	3e+0	At5g47410	unknown protein	O.I.	H.G.	S.X.
0.39	45.6	0.99	Zm.206.4.A1_s_at	CF048188	ribosomal protein S21 /// 40S ribosomal subunit protein S21	-	4e-16	At3g53890	40S ribosomal protein S21 (RPS21B)	O.I.	H.G.	S.X.
0.39	45.6	0.99	Zm.1247.1.S1_at	BE575051	EARLY flowering 4 protein	-	4e+0	At3g17570	F-box family protein	O.I.	H.G.	S.X.
0.38	44.2	0.99	Zm.13975.1.A1_at	CK985455	carbonyl reductase 3	-	6e-1	At4g20880	ethylene-responsive nuclear protein / ethylene-regulated nuclear protein (ERT2)	O.I.	H.G.	S.X.
0.38	44.2	0.99	ZmAffx.781.1.A1_at	AI746268	-	-	1e+1	At4g37450	AGP18 (ARABINOGALACTAN PROTEIN 18)	O.I.	H.G.	S.X.
0.37	42.3	0.99	ZmAffx.1178.1.S1_at	AW927494	hypothetical protein LOC100272910	-	3e+0	At2g18400	ribosomal protein L6 family protein	O.I.	H.G.	S.X.
0.36	41.3	0.99	Zm.13538.1.A1_at	CO529570	-	-	4e-5	At3g22660	rRNA processing protein-related	O.I.	H.G.	S.X.
0.35	38.9	0.99	ZmAffx.915.1.S1_at	AI770972	-	-	8e+0	Atmg01050	-	O.I.	H.G.	S.X.
0.35	38.9	0.99	Zm.8097.1.A1_at	BM336868	-	-	2e+0	At3g21940	receptor protein kinase-related	O.I.	H.G.	S.X.
0.35	38.9	0.99	ZmAffx.976.1.A1_at	AI833931	-	-	1e-2	At4g23880	unknown protein	O.I.	H.G.	S.X.
0.35	38.9	0.99	Zm.327.1.S1_at	AB042270.1	histidine kinase 1	-	3e-14	At2g01830	WOL (WOODEN LEG)	O.I.	H.G.	S.X.
0.34	37.2	1.00	Zm.4171.1.A1_at	BG841769	isoamyl acetate-hydrolyzing esterase	-	3e+0	At1g69190	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase/ dihydropteroate synthase	O.I.	H.G.	S.X.
0.33	36.0	0.99	ZmAffx.1060.1.A1_at	AI881420	-	-	1e-9	At1g51570	C2 domain-containing protein	O.I.	H.G.	S.X.
0.33	36.0	0.99	Zm.6275.1.S1_a_at	AF540907.1	benzoxazin6	-	7e-1	At1g06640	2-oxoglutarate-dependent dioxygenase, putative	O.I.	H.G.	S.X.
0.32	33.4	0.99	Zm.15242.1.A1_at	BM340075	-	-	1e+1	At3g16712	unknown protein	O.I.	H.G.	S.X.
0.32	33.4	0.99	ZmAffx.1086.1.S1_at	AW018229	-	-	3e+0	At2g01755	unknown protein	O.I.	H.G.	S.X.
0.31	31.6	0.99	ZmAffx.1051.1.S1_at	AI881809	hypothetical protein LOC100272557	-	2e-1	At3g01790	ribosomal protein L13 family protein	O.I.	H.G.	S.X.
0.30	29.8	0.99	ZmAffx.525.1.S1_at	AI711680	-	-	8e-1	At5g23170	protein kinase family protein	O.I.	H.G.	S.X.
0.30	29.8	0.99	Zm.14617.1.A1_at	BM080453	Hypothetical protein LOC100191188	-	2e+0	At2g33130	RALFL18 (ralf-like 18)	O.I.	H.G.	S.X.
0.28	28.1	0.99	Zm.2805.1.A1_at	AW352682	hypothetical protein LOC100274443	-	5e+0	At4g13266	unknown protein	O.I.	H.G.	S.X.
0.27	24.6	0.99	Zm.11787.1.A1_a_at	BM380772	-	-	6e+0	At5g17523	-	O.I.	H.G.	S.X.
0.27	24.6	0.99	Zm.4194.1.A1_at	AI861230	hypothetical protein LOC100276018	-	3e+0	At1g71180	6-phosphogluconate dehydrogenase NAD-binding domain-containing protein	O.I.	H.G.	S.X.
0.21	15.5	0.99	Zm.14092.1.S1_at	CA399825	mitotic checkpoint protein	-	8e-4	At5g49880	mitotic checkpoint family protein	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.1 98.7 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.1 98.6 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.9 98.6 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.3 98.5 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.5 98.4 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.5 98.4 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.3 98.4 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1 98.4 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.5 98.3 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1 97.7 GSM320471 protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
13.1	98.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.1	98.6	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.9	98.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.3	98.5	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.5	98.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.5	98.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.3	98.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1	98.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.5	98.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1	97.7	GSM320471	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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Gene ID	ZmAffx.955.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At2g47480: unknown protein (HF=8e-1)
Module size	43 genes
NF	0.39
%ile	42.9

Co-expression analysis

Gene ID ZmAffx.955.1.S1_at Gene name Homology with ArabidopsisSimilar to At2g47480: unknown protein (HF=8e-1) Module size 43 genes NF 0.39 %ile 42.9

Co-expressed genes

Click More genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_vinifera

Gene ID ZmAffx.955.1.S1_at

Gene name
Homology with Arabidopsis Similar to At2g47480: unknown protein (HF=8e-1)

Module size 43 genes

NF 0.39

%ile 42.9

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera