Co-expression analysis

Gene ID ZmAffx.954.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At1g26480: GRF12 (GENERAL REGULATORY FACTOR 12) (HF=3e+0)
Module size 7 genes
NF 0.65
%ile 87.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6077.80.99ZmAffx.954.1.S1_atAI833471--3e+0At1g26480GRF12 (GENERAL REGULATORY FACTOR 12)O.I.H.G.S.X.
0.9299.20.99Zm.12526.1.A1_x_atAI734393--3e+0At1g58150unknown proteinO.I.H.G.S.X.
0.7188.20.99Zm.15.1.A1_atAY271262.1NADP malic enzyme3-3e-16At1g79750ATNADP-ME4 (NADP-malic enzyme 4)O.I.H.G.S.X.
0.6381.10.99Zm.9952.1.A1_atBM349898--6e+0At5g46115unknown proteinO.I.H.G.S.X.
0.5369.10.99Zm.1690.1.A1_atCK347441density-regulated protein-4e-17At5g11900eukaryotic translation initiation factor SUI1 family proteinO.I.H.G.S.X.
0.5065.70.99Zm.17712.1.S1_atCK370052hypothetical protein LOC100275406-8e-20At5g19855unknown proteinO.I.H.G.S.X.
0.4352.80.99ZmAffx.917.1.S1_atAI782944--1e+1At5g26810pectinesterase family proteinO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6785.80.98Zm.9999.1.A1_atCF625760--7e-3At5g18230transcription regulator NOT2/NOT3/NOT5 family proteinO.I.H.G.S.X.
0.6785.80.99Zm.10540.2.A1_a_atBQ538200branched-chain-amino-acid aminotransferase-1e+0At5g65780ATBCAT-5O.I.H.G.S.X.
0.6179.50.98Zm.17447.1.A1_atCK348160--3e+0At5g25940early nodulin-relatedO.I.H.G.S.X.
0.5469.80.99Zm.3865.2.A1_atCF625226--5e-54At4g16155dihydrolipoyl dehydrogenaseO.I.H.G.S.X.
0.5369.10.98ZmAffx.854.1.S1_atAI770665hypothetical protein LOC100273705-5e-8At4g24780pectate lyase family proteinO.I.H.G.S.X.
0.5065.70.98Zm.8868.1.A1_atBM335939hypothetical protein LOC100275200-2e+0At3g05000transport protein particle (TRAPP) component Bet3 family proteinO.I.H.G.S.X.
0.5065.70.98Zm.2008.1.A1_atCF623731hypothetical protein LOC100279662-8e-8At3g02990ATHSFA1EO.I.H.G.S.X.
0.5065.70.98Zm.17716.1.A1_a_atCK370089--4e+0At4g05010F-box family proteinO.I.H.G.S.X.
0.5065.70.99ZmAffx.929.1.S1_atAI795460--5e-2At5g17900-O.I.H.G.S.X.
0.5065.70.99ZmAffx.616.1.A1_atAI715044--3e+0At2g22970serine carboxypeptidase S10 family proteinO.I.H.G.S.X.
0.5065.70.99Zm.3124.1.S1_atAY109771.1CONSTANS interacting protein 4-1e+1At5g37770TCH2 (TOUCH 2)O.I.H.G.S.X.
0.4861.30.99Zm.6214.1.A1_a_atBQ538548hypothetical protein LOC100273730 /// ORMDL family protein-9e-12At5g42000ORMDL family proteinO.I.H.G.S.X.
0.4759.90.99ZmAffx.908.1.S1_atAI770943hypothetical protein LOC100279225-8e-1At5g41720-O.I.H.G.S.X.
0.4658.40.98Zm.10632.1.A1_atBQ538717--6e-3At2g45530zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.4658.40.99ZmAffx.902.1.A1_atAI770904Hypothetical protein LOC100191467-3e+0At4g16640matrix metalloproteinase, putativeO.I.H.G.S.X.
0.4658.40.98Zm.5578.4.S1_atAI677290Hypothetical protein LOC100193656-4e+0At1g34910unknown proteinO.I.H.G.S.X.
0.4658.40.99Zm.8805.1.A1_atBM337840--6e+0At5g1620050S ribosomal protein-relatedO.I.H.G.S.X.
0.4455.70.98ZmAffx.534.1.A1_atAI711770ubiquitin-conjugating enzyme E2 E3-3e+0At3g50651unknown proteinO.I.H.G.S.X.
0.4352.80.98Zm.7294.1.S1_atBQ293982hypothetical protein LOC100273088-4e-8At5g04430BTR1L (BINDING TO TOMV RNA 1L (LONG FORM))O.I.H.G.S.X.
0.4251.30.99Zm.10517.1.S1_atCO533971hypothetical protein LOC100272293-3e-16At1g224102-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putativeO.I.H.G.S.X.
0.4251.30.99ZmAffx.886.1.A1_atAI770831--8e-1At5g22220-O.I.H.G.S.X.
0.4251.30.99ZmAffx.1324.1.S1_at40794996-147--7e-1At5g32440-O.I.H.G.S.X.
0.4048.50.98ZmAffx.883.1.S1_atAI770811hypothetical protein LOC100274350-3e+0At3g15080exonuclease family proteinO.I.H.G.S.X.
0.4048.50.98Zm.8886.1.A1_atBM074197--7e-1At3g54490RPB5E (RNA POLYMERASE II FIFTH LARGEST SUBUNIT, E)O.I.H.G.S.X.
0.4048.50.98Zm.19275.1.A1_atBM080650hypothetical protein LOC100191349-3e-1At3g12390nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putativeO.I.H.G.S.X.
0.4048.50.99ZmAffx.827.1.S1_atAI770520Growth-regulating factor 8-like-3e+0At3g21610-O.I.H.G.S.X.
0.4048.50.99Zm.16469.1.S1_atCF650934--3e-4At3g15352ATCOX17O.I.H.G.S.X.
0.3945.60.99Zm.16261.1.A1_atCA400028--2e-3At1g79920ATP bindingO.I.H.G.S.X.
0.3844.20.98Zm.4109.1.A1_atCD441071NADP-dependent D-sorbitol-6-phosphate dehydrogenase /// NADP-dependent D-sorbitol-6-phosphate dehydrogenase-7e-38At2g21250mannose 6-phosphate reductase (NADPH-dependent), putativeO.I.H.G.S.X.
0.3844.20.99ZmAffx.1283.1.S1_at40794996-131--9e-1At1g32470glycine cleavage system H protein, mitochondrial, putativeO.I.H.G.S.X.
0.3641.30.97Zm.1803.1.A1_atCK369047--6e-1At5g42110unknown proteinO.I.H.G.S.X.
0.3641.30.98ZmAffx.1039.1.S1_atAI881774--3e+0At2g43240nucleotide-sugar transmembrane transporter/ sugar:hydrogen symporterO.I.H.G.S.X.
0.3641.30.98ZmAffx.808.1.A1_atAI770390--8e-4At2g40070-O.I.H.G.S.X.
0.3641.30.98ZmAffx.960.1.S1_atAI833639--3e+0At2g19640ASHR2 (ASH1-RELATED PROTEIN 2)O.I.H.G.S.X.
0.3641.30.99ZmAffx.764.1.A1_atAI746075hypothetical protein LOC100191363-3e+0At2g31215basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.3641.30.99Zm.3964.1.A1_a_atAF205603.1ferric-chelate reductase (NADH)2-1e-17At5g17770ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1)O.I.H.G.S.X.
0.3641.30.99ZmAffx.848.1.A1_atAI770631--8e-1At1g22720wall-associated kinase, putativeO.I.H.G.S.X.
0.3538.90.99Zm.3805.1.S1_atAY112434.1hypothetical protein LOC100276279-1e-1At4g18070unknown proteinO.I.H.G.S.X.
0.3538.90.99Zm.10674.1.A1_atBM380580hypothetical protein LOC100194243-1e+0At4g25720QC (GLUTAMINYL CYCLASE)O.I.H.G.S.X.
0.3538.90.98ZmAffx.775.1.S1_atAI746211--8e-1At4g32480unknown proteinO.I.H.G.S.X.
0.3538.90.99ZmAffx.962.1.A1_atAI833777hypothetical protein LOC100275523-3e-22At1g64680unknown proteinO.I.H.G.S.X.
0.3336.00.98Zm.15678.2.A1_atCF632171--5e+0At1g43130LCV2 (LIKE COV 2)O.I.H.G.S.X.
0.3336.00.98Zm.14539.1.A1_atAY108777.1R2R3MYB-domain protein-7e-8At3g12720ATMYB67 (MYB DOMAIN PROTEIN 67)O.I.H.G.S.X.
0.3336.00.98Zm.6396.1.A1_atBI396088protein phosphatase 2C ABI2-5e+0At3g11580DNA-binding protein, putativeO.I.H.G.S.X.
0.3336.00.98Zm.17372.1.A1_atCK371659--7e+0At1g72290trypsin and protease inhibitor family protein / Kunitz family proteinO.I.H.G.S.X.
0.3336.00.99Zm.12462.1.A1_atAW066887hypothetical protein LOC100277431-8e-1At5g45630unknown proteinO.I.H.G.S.X.
0.3233.40.98ZmAffx.593.1.A1_atAI715021--2e-1At3g28630-O.I.H.G.S.X.
0.3233.40.97Zm.16959.2.A1_atCK347555hypothetical protein LOC100274593-1e-13At3g46230ATHSP17.4O.I.H.G.S.X.
0.3233.40.98Zm.4051.1.A1_atCB350632protein SUR2-1e-27At1g69640SBH1 (SPHINGOID BASE HYDROXYLASE 1)O.I.H.G.S.X.
0.3131.60.98Zm.14732.1.S1_atCB250091hypothetical protein LOC100192107-4e-12At3g22290unknown proteinO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
18.999.2GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
16.499.0GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
15.999.0GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.898.9GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.898.8GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.898.7GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.098.5GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.098.5GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.198.2GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.096.7GSM290555CCR mutant M1 with array type maize from AffymetrixGSE11531Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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