Co-expression analysis

Gene ID ZmAffx.954.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At1g26480: GRF12 (GENERAL REGULATORY FACTOR 12) (HF=3e+0)
Module size 7 genes
NF 0.65
%ile 87.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6077.80.99ZmAffx.954.1.S1_atAI833471--3e+0At1g26480GRF12 (GENERAL REGULATORY FACTOR 12)O.I.H.G.S.X.
0.9299.20.99Zm.12526.1.A1_x_atAI734393--3e+0At1g58150unknown proteinO.I.H.G.S.X.
0.7188.20.99Zm.15.1.A1_atAY271262.1NADP malic enzyme3-3e-16At1g79750ATNADP-ME4 (NADP-malic enzyme 4)O.I.H.G.S.X.
0.6381.10.99Zm.9952.1.A1_atBM349898--6e+0At5g46115unknown proteinO.I.H.G.S.X.
0.5369.10.99Zm.1690.1.A1_atCK347441density-regulated protein-4e-17At5g11900eukaryotic translation initiation factor SUI1 family proteinO.I.H.G.S.X.
0.5065.70.99Zm.17712.1.S1_atCK370052hypothetical protein LOC100275406-8e-20At5g19855unknown proteinO.I.H.G.S.X.
0.4352.80.99ZmAffx.917.1.S1_atAI782944--1e+1At5g26810pectinesterase family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
18.999.2GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
16.499.0GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
15.999.0GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.898.9GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.898.8GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.898.7GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.098.5GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.098.5GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.198.2GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.096.7GSM290555CCR mutant M1 with array type maize from AffymetrixGSE11531Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)Link to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os02g0563000, orthologous to the query gene, ZmAffx.954.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9499.4Os02g0563000At1g26480--9e+0At4g14358-O.I.H.G.S.X.
0.5777.0Os03g0636700At1g26480-IQ calmodulin-binding region domain containingprotein2e-1At4g33660unknown proteinO.I.H.G.S.X.
0.5777.0Os01g0245600At1g26480-Conserved hypothetical protein6e+0At5g55570unknown proteinO.I.H.G.S.X.
0.5676.3Os03g0652300At1g26480--3e-1At3g50330HEC2 (HECATE 2)O.I.H.G.S.X.
0.5471.9Os04g0471000At1g26480--7e-2At5g43170AZF3 (ARABIDOPSIS ZINC-FINGER PROTEIN 3)O.I.H.G.S.X.
0.5068.0Os06g0634800At1g26480--3e+0At5g66580unknown proteinO.I.H.G.S.X.
0.5068.0Os04g0454801At1g26480--3e-1At1g11260STP1 (SUGAR TRANSPORTER 1)O.I.H.G.S.X.
0.5068.0Os10g0406000At1g26480--2e-2At2g44840ERF13 (ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13)O.I.H.G.S.X.
0.4762.3Os12g0168650At1g26480--3e-2At3g61870unknown proteinO.I.H.G.S.X.
0.4458.1Os02g0781200At1g26480--2e+0At5g64120peroxidase, putativeO.I.H.G.S.X.
0.4051.1Os09g0107800At1g26480--5e-5At3g50330HEC2 (HECATE 2)O.I.H.G.S.X.
0.4051.1Os11g0175200At1g26480--6e-1At5g55570unknown proteinO.I.H.G.S.X.
0.3644.0Os08g0404800At1g26480--3e+0At4g24026unknown proteinO.I.H.G.S.X.
0.3644.0Os01g0213200At1g26480--4e-1At1g47970unknown proteinO.I.H.G.S.X.
0.3644.0Os08g0452600At1g26480--5e-3At4g05091unknown proteinO.I.H.G.S.X.
0.3440.0Os10g0517800At1g26480-Hypothetical protein3e+0At5g58260-O.I.H.G.S.X.
0.3440.0Os10g0368650At1g26480--3e+0At5g23680sterile alpha motif (SAM) domain-containing proteinO.I.H.G.S.X.
0.3338.8Os06g0679600At1g26480--6e-5At2g21660CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)O.I.H.G.S.X.
0.3236.3Os08g0241700At1g26480--2e-2At2g01275zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.3032.7Os03g0332366At1g26480--2e-1At5g04080unknown proteinO.I.H.G.S.X.
0.3032.7Os03g0597400At1g26480-Conserved hypothetical protein5e-2At3g04640glycine-rich proteinO.I.H.G.S.X.
0.2524.1Os06g0678100At1g26480-Hypothetical protein1e-1At4g13850GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2)O.I.H.G.S.X.
0.2321.2Os06g0233100At1g26480--3e+0At5g65000nucleotide-sugar transporter family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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