Co-expression analysis

Gene ID ZmAffx.929.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g17900: - (HF=5e-2)
Module size 8 genes
NF 0.35
%ile 36.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6179.50.99ZmAffx.929.1.S1_atAI795460--5e-2At5g17900-O.I.H.G.S.X.
0.3844.20.99Zm.18245.1.S1_atAI665288--2e+0At5g18130unknown proteinO.I.H.G.S.X.
0.3538.90.99ZmAffx.954.1.S1_atAI833471--3e+0At1g26480GRF12 (GENERAL REGULATORY FACTOR 12)O.I.H.G.S.X.
0.3538.90.99Zm.4716.1.A1_atAI738149hypothetical protein LOC100193057-1e-1At4g37750ANT (AINTEGUMENTA)O.I.H.G.S.X.
0.3437.20.99ZmAffx.1283.1.S1_at40794996-131--9e-1At1g32470glycine cleavage system H protein, mitochondrial, putativeO.I.H.G.S.X.
0.3233.40.98Zm.9948.1.A1_atCB3507883-N-debenzoyl-2-deoxytaxol N-benzoyltransferase-2e+0At1g54575unknown proteinO.I.H.G.S.X.
0.2928.10.99Zm.12454.1.A1_atCF629114hypothetical protein LOC100273736-6e-3At1g10640polygalacturonaseO.I.H.G.S.X.
0.2318.60.98Zm.7791.1.A1_atBM382756hypothetical protein LOC100191966-3e-8At4g15960catalytic/ epoxide hydrolaseO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
19.099.2GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
17.699.1GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
15.999.0GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.298.8GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.898.8GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.598.8GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.398.8GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.698.7GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.198.5GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.796.5GSM320456protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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