CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID ZmAffx.925.1.S1_at

Gene name
Homology with Arabidopsis Similar to At1g43171: unknown protein (HF=8e-1)

Module size 6 genes

NF 0.65

%ile 86.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 99.0 0.99 ZmAffx.925.1.S1_at AI795348 - - 8e-1 At1g43171 unknown protein O.I. H.G. S.X.
0.80 94.0 0.99 Zm.4625.1.A1_at AI737394 - - 8e-1 At1g78630 emb1473 (embryo defective 1473) O.I. H.G. S.X.
0.67 85.8 0.99 Zm.9555.2.A1_at CK347442 - - 3e+0 At2g22241 unknown protein O.I. H.G. S.X.
0.63 81.1 0.99 ZmAffx.786.1.A1_at AI759096 - - 3e-3 At1g72450 JAZ6 (JASMONATE-ZIM-DOMAIN PROTEIN 6) O.I. H.G. S.X.
0.40 48.5 0.99 Zm.16505.1.A2_at CF633865 - - 0 At5g56030 HSP81-2 (HEAT SHOCK PROTEIN 81-2) O.I. H.G. S.X.
0.38 44.2 0.99 Zm.18993.1.S1_at CO528827 - - 3e-3 At2g10950 BSD domain-containing protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
20.8 99.4 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.0 99.3 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.8 99.0 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.8 98.8 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.2 98.8 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.7 98.7 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.3 98.4 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1 98.4 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.3 98.2 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.5 95.1 GSM320456 protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the grape gene, 1614560_at, orthologous to the query gene, ZmAffx.925.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.87 95.2 1614560_at At1g43171 hypothetical protein LOC100267756 - 3e-10 At1g75180 unknown protein O.I. H.G. S.X.
0.40 57.7 1619442_at At1g43171 hypothetical protein LOC100249606 - 1e-1 At1g79270 ECT8 (evolutionarily conserved C-terminal region 8) O.I. H.G. S.X.
0.33 45.7 1608884_at At1g43171 hypothetical protein LOC100266964 - 3e-1 At3g54790 armadillo/beta-catenin repeat family protein / U-box domain-containing protein O.I. H.G. S.X.
0.28 37.7 1609758_at At1g43171 hypothetical protein LOC100249051 - 7e-6 At2g01680 ankyrin repeat family protein O.I. H.G. S.X.
0.25 30.5 1612894_at At1g43171 hypothetical protein LOC100252013 - 2e-28 At4g39100 SHL1 (short life) O.I. H.G. S.X.
0.22 25.6 1614891_s_at At1g43171 hypothetical protein LOC100251643 - 2e-25 At3g56680 nucleic acid binding O.I. H.G. S.X.
0.20 22.4 1620870_s_at At1g43171 hypothetical protein LOC100251175 - 3e-18 At3g16640 TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN) O.I. H.G. S.X.
0.20 22.4 1614188_at At1g43171 hypothetical protein LOC100243205 - 2e-25 At3g10850 GLY2 O.I. H.G. S.X.
0.17 18.2 1618977_at At1g43171 hypothetical protein LOC100241190 - 4e-1 At4g18720 transcription elongation factor-related O.I. H.G. S.X.
0.16 16.7 1611888_s_at At1g43171 - - 4e+0 At5g16160 unknown protein O.I. H.G. S.X.
0.14 14.4 1621718_at At1g43171 hypothetical protein LOC100244137 - 5e-26 At2g25940 ALPHA-VPE (alpha-vacuolar processing enzyme) O.I. H.G. S.X.
0.13 13.3 1611629_s_at At1g43171 hypothetical protein LOC100247481 - 9e-2 At3g25910 zinc ion binding O.I. H.G. S.X.
0.09 9.4 1614665_s_at At1g43171 similar to Tubby; Cyclin-like F-box - 5e-16 At1g53320 AtTLP7 (TUBBY LIKE PROTEIN 7) O.I. H.G. S.X.
0.09 9.4 1610822_at At1g43171 hypothetical protein LOC100251604 - 1e-3 At4g17720 RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum

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