Co-expression analysis

Gene ID	ZmAffx.925.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g43171: unknown protein (HF=8e-1)
Module size	6 genes
NF	0.65
%ile	86.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.99	ZmAffx.925.1.S1_at	AI795348	-	-	8e-1	At1g43171	unknown protein	O.I.	H.G.	S.X.	Please select
0.80	94.0	0.99	Zm.4625.1.A1_at	AI737394	-	-	8e-1	At1g78630	emb1473 (embryo defective 1473)	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.99	Zm.9555.2.A1_at	CK347442	-	-	3e+0	At2g22241	unknown protein	O.I.	H.G.	S.X.	Please select
0.63	81.1	0.99	ZmAffx.786.1.A1_at	AI759096	-	-	3e-3	At1g72450	JAZ6 (JASMONATE-ZIM-DOMAIN PROTEIN 6)	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.99	Zm.16505.1.A2_at	CF633865	-	-	0	At5g56030	HSP81-2 (HEAT SHOCK PROTEIN 81-2)	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.99	Zm.18993.1.S1_at	CO528827	-	-	3e-3	At2g10950	BSD domain-containing protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
20.8	99.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.0	99.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.8	99.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.8	98.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.2	98.8	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.7	98.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.3	98.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1	98.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.3	98.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.5	95.1	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.30964.2.A1_at, orthologous to the query gene, ZmAffx.925.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	94.9	PtpAffx.30964.2.A1_at	At1g43171	hypothetical protein	-	5e+0	At5g48335	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	PtpAffx.205398.1.S1_at	At1g43171	hypothetical protein	-	4e-1	At2g34330	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	PtpAffx.3203.4.A1_at	At1g43171	hypothetical protein	-	7e-59	At4g24190	SHD (SHEPHERD)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	PtpAffx.112600.1.A1_at	At1g43171	hypothetical protein	-	2e+0	At1g52470	hydrolase	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.09	14.6	PtpAffx.140163.1.A1_at	At1g43171	-	-	7e+0	At5g46140	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.01	2.2	PtpAffx.218958.1.S1_x_at	At1g43171	hypothetical protein	-	7e+0	At5g65260	polyadenylate-binding protein family protein / PABP family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

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