CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID ZmAffx.925.1.S1_at

Gene name
Homology with Arabidopsis Similar to At1g43171: unknown protein (HF=8e-1)

Module size 6 genes

NF 0.65

%ile 86.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 99.0 0.99 ZmAffx.925.1.S1_at AI795348 - - 8e-1 At1g43171 unknown protein O.I. H.G. S.X.
0.80 94.0 0.99 Zm.4625.1.A1_at AI737394 - - 8e-1 At1g78630 emb1473 (embryo defective 1473) O.I. H.G. S.X.
0.67 85.8 0.99 Zm.9555.2.A1_at CK347442 - - 3e+0 At2g22241 unknown protein O.I. H.G. S.X.
0.63 81.1 0.99 ZmAffx.786.1.A1_at AI759096 - - 3e-3 At1g72450 JAZ6 (JASMONATE-ZIM-DOMAIN PROTEIN 6) O.I. H.G. S.X.
0.40 48.5 0.99 Zm.16505.1.A2_at CF633865 - - 0 At5g56030 HSP81-2 (HEAT SHOCK PROTEIN 81-2) O.I. H.G. S.X.
0.38 44.2 0.99 Zm.18993.1.S1_at CO528827 - - 3e-3 At2g10950 BSD domain-containing protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
20.8 99.4 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.0 99.3 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.8 99.0 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.8 98.8 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.2 98.8 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.7 98.7 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.3 98.4 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1 98.4 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.3 98.2 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.5 95.1 GSM320456 protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the rice gene, Os01g0927300, orthologous to the query gene, ZmAffx.925.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.81 94.8 Os01g0927300 At1g43171 - - 4e-1 At4g33130 - O.I. H.G. S.X.
0.45 58.8 Os07g0287100 At1g43171 - TPR-like domain containing protein 8e-5 At1g78915 binding O.I. H.G. S.X.
0.22 19.4 Os01g0749400 At1g43171 - Glycosyl transferase, family 20 domain containingprotein 2e-12 At1g06410 ATTPS7 O.I. H.G. S.X.
0.22 19.4 Os04g0235600 At1g43171 - ATP synthase B chain (EC 3.6.3.14) (Subunit I) 2e-42 Atcg00130 - O.I. H.G. S.X.
0.22 19.4 Os01g0792400 At1g43171 - Photosystem I assembly protein ycf4 2e-53 Atcg00520 - O.I. H.G. S.X.
0.19 15.1 Os05g0212400 At1g43171 - Uncharacterized plant-specific domain 01589containing protein 1e-9 At2g46420 unknown protein O.I. H.G. S.X.
0.19 15.1 Os04g0505000 At1g43171 - Plant protein of unknown function DUF869 familyprotein 9e-2 At4g21500 unknown protein O.I. H.G. S.X.
0.14 9.3 Os05g0267100 At1g43171 - Cellular retinaldehyde-binding)/triple function,C-terminal domain containing protein 3e+0 At3g11490 rac GTPase activating protein, putative O.I. H.G. S.X.
0.13 8.2 Os09g0344900 At1g43171 - Zn-finger, RING domain containing protein 2e+0 At3g44230 unknown protein O.I. H.G. S.X.
0.13 8.2 Os09g0515400 At1g43171 - Conserved hypothetical protein 2e+0 At1g80700 unknown protein O.I. H.G. S.X.
0.12 7.2 Os07g0253000 At1g43171 - Conserved hypothetical protein 9e-2 At1g66810 zinc finger (CCCH-type) family protein O.I. H.G. S.X.
0.11 6.5 Os11g0427500 At1g43171 - The start codon is not identified. 9e-1 At4g21020 late embryogenesis abundant domain-containing protein / LEA domain-containing protein O.I. H.G. S.X.
0.10 5.7 Os07g0619100 At1g43171 - Plant protein of unknown function DUF827 familyprotein 6e-3 At2g13150 transcription factor O.I. H.G. S.X.
0.09 4.9 Os06g0103600 At1g43171 - Aminoacyl-t-RNA synthetase precursor 8e-46 At3g48110 EDD1 (EMBRYO-DEFECTIVE-DEVELOPMENT 1) O.I. H.G. S.X.
0.07 3.7 Os03g0182400 At1g43171 - SAC domain protein 4 3e-2 At3g14205 phosphoinositide phosphatase family protein O.I. H.G. S.X.
0.07 3.7 Os10g0476900 At1g43171 - Protein prenyltransferase domain containingprotein 4e-1 At3g18360 VQ motif-containing protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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