CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID ZmAffx.908.1.A1_at

Gene name
Homology with Arabidopsis Similar to At5g41720: - (HF=8e-1)

Module size 6 genes

NF 0.35

%ile 36.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.44 55.7 0.94 ZmAffx.908.1.A1_at AI770943 - - 8e-1 At5g41720 - O.I. H.G. S.X.
0.77 92.1 0.94 Zm.12621.1.A1_at BU051165 - - 4e-9 At2g24580 sarcosine oxidase family protein O.I. H.G. S.X.
0.67 85.8 0.95 Zm.17558.1.S1_at CK370895 hypothetical protein LOC100273430 - 5e-5 At4g01050 hydroxyproline-rich glycoprotein family protein O.I. H.G. S.X.
0.67 85.8 0.97 Zm.12129.1.S1_at BM380039 - - 7e-1 At1g28330 DYL1 (DORMANCY-ASSOCIATED PROTEIN-LIKE 1) O.I. H.G. S.X.
0.21 15.5 0.95 Zm.1069.1.A1_at AW066696 myristoyl-acyl carrier protein thioesterase - 4e-1 At4g13050 acyl-(acyl carrier protein) thioesterase, putative / acyl-ACP thioesterase, putative / oleoyl-(acyl-carrier protein) hydrolase, putative / S-acyl fatty acid synthase thioesterase, putative O.I. H.G. S.X.
0.16 9.4 0.95 ZmAffx.830.1.A1_at AI770534 - - 6e+0 At5g40930 TOM20-4 (TRANSLOCASE OF OUTER MEMBRANE 20-4) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	77.8	0.92	Zm.345.1.S1_at	AJ250987.1	OCL5 protein	-	4e-10	At1g05230	HDG2 (HOMEODOMAIN GLABROUS 2)	O.I.	H.G.	S.X.
0.50	65.7	0.94	Zm.19102.1.S1_at	CO518558	hypothetical protein LOC100217305	-	2e-14	At1g68640	PAN (PERIANTHIA)	O.I.	H.G.	S.X.
0.42	51.3	0.87	Zm.13887.1.A1_at	AF099411.1	R2R3MYB-domain protein	-	9e-1	At5g01200	myb family transcription factor	O.I.	H.G.	S.X.
0.42	51.3	0.94	Zm.8240.1.A1_at	BM073391	hypothetical protein LOC100274496	-	5e+0	At5g23900	60S ribosomal protein L13 (RPL13D)	O.I.	H.G.	S.X.
0.36	41.3	0.94	ZmAffx.1075.1.S1_at	AI947879	-	-	1e+1	At5g10130	pollen Ole e 1 allergen and extensin family protein	O.I.	H.G.	S.X.
0.35	38.9	0.93	Zm.4803.1.S1_at	AY111883.1	actin-7	-	1e-142	At2g37620	ACT1 (ACTIN 1)	O.I.	H.G.	S.X.
0.30	29.8	0.90	Zm.19032.1.A1_at	CO527547	-	-	4e-1	At3g45490	-	O.I.	H.G.	S.X.
0.29	28.1	0.92	Zm.4733.1.A1_at	CD441088	hypothetical protein LOC100193930	-	2e-14	At1g76900	AtTLP1 (TUBBY LIKE PROTEIN 1)	O.I.	H.G.	S.X.
0.29	28.1	0.93	Zm.11385.1.A1_at	CB351297	-	-	8e-11	At4g08390	SAPX (STROMAL ASCORBATE PEROXIDASE)	O.I.	H.G.	S.X.
0.29	28.1	0.93	Zm.9481.1.A1_at	BM269226	hypothetical protein LOC100192909	-	3e+0	At2g46230	-	O.I.	H.G.	S.X.
0.29	28.1	0.96	ZmAffx.1435.1.S1_at	11990232-1	-	-	0	Atcg00020	-	O.I.	H.G.	S.X.
0.27	24.6	0.89	Zm.15732.2.A1_a_at	AI734668	hypothetical protein LOC100280046	-	1e+0	At3g45160	unknown protein	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
20.2 99.3 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.6 99.3 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.6 99.1 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.8 98.8 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.5 98.8 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.3 98.8 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.1 98.2 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6 97.9 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9 97.7 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.4 94.9 GSM320458 protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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