Co-expression analysis

Gene ID	ZmAffx.908.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At5g41720: - (HF=8e-1)
Module size	6 genes
NF	0.35
%ile	36.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.44	55.7	0.94	ZmAffx.908.1.A1_at	AI770943	-	-	8e-1	At5g41720	-	O.I.	H.G.	S.X.	Please select
0.77	92.1	0.94	Zm.12621.1.A1_at	BU051165	-	-	4e-9	At2g24580	sarcosine oxidase family protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.95	Zm.17558.1.S1_at	CK370895	hypothetical protein LOC100273430	-	5e-5	At4g01050	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.97	Zm.12129.1.S1_at	BM380039	-	-	7e-1	At1g28330	DYL1 (DORMANCY-ASSOCIATED PROTEIN-LIKE 1)	O.I.	H.G.	S.X.	Please select
0.21	15.5	0.95	Zm.1069.1.A1_at	AW066696	myristoyl-acyl carrier protein thioesterase	-	4e-1	At4g13050	acyl-(acyl carrier protein) thioesterase, putative / acyl-ACP thioesterase, putative / oleoyl-(acyl-carrier protein) hydrolase, putative / S-acyl fatty acid synthase thioesterase, putative	O.I.	H.G.	S.X.	Please select
0.16	9.4	0.95	ZmAffx.830.1.A1_at	AI770534	-	-	6e+0	At5g40930	TOM20-4 (TRANSLOCASE OF OUTER MEMBRANE 20-4)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
20.2	99.3	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.6	99.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.6	99.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.8	98.8	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.5	98.8	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.3	98.8	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.1	98.2	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6	97.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9	97.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.4	94.9	GSM320458	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the grape gene, 1621491_at, orthologous to the query gene, ZmAffx.908.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.94	99.3	1621491_at	At5g41720	-	-	3e+0	At5g28310	oxidoreductase-related	O.I.	H.G.	S.X.	Please select
0.61	83.2	1619939_at	At5g41720	-	-	2e+1	At5g43430	ETFBETA	O.I.	H.G.	S.X.	Please select
0.55	77.3	1614362_at	At5g41720	-	-	8e+0	At5g44574	unknown protein	O.I.	H.G.	S.X.	Please select
0.55	77.3	1618745_at	At5g41720	-	-	7e-4	At1g55680	WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.54	75.7	1621060_at	At5g41720	-	-	1e+0	At2g25185	-	O.I.	H.G.	S.X.	Please select
0.51	73.2	1615353_at	At5g41720	-	-	4e-12	At4g04614	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	72.7	1621607_at	At5g41720	-	-	1e-1	At5g15260	structural constituent of ribosome	O.I.	H.G.	S.X.	Please select
0.49	69.3	1620902_a_at	At5g41720	-	-	6e-1	At1g67210	proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein	O.I.	H.G.	S.X.	Please select
0.49	69.3	1615003_s_at	At5g41720	hypothetical protein LOC100248446	-	9e-27	At1g51650	ATP synthase epsilon chain, mitochondrial	O.I.	H.G.	S.X.	Please select
0.48	68.8	1608221_at	At5g41720	-	-	4e+0	At5g39330	unknown protein	O.I.	H.G.	S.X.	Please select
0.47	67.7	1616660_s_at	At5g41720	similar to 60S ribosomal protein L19	-	1e+0	At4g29960	unknown protein	O.I.	H.G.	S.X.	Please select
0.47	67.7	1614056_at	At5g41720	-	-	6e-2	At5g28090	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	66.5	1620272_at	At5g41720	hypothetical protein LOC100252883	-	2e+0	At2g37330	ALS3 (ALUMINUM SENSITIVE 3)	O.I.	H.G.	S.X.	Please select
0.46	66.5	1620757_at	At5g41720	hypothetical protein LOC100260825	-	4e-3	At1g51600	TIFY2A	O.I.	H.G.	S.X.	Please select
0.45	64.6	1612278_at	At5g41720	hypothetical protein LOC100241738	-	7e-1	At5g37380	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.44	64.1	1621486_at	At5g41720	-	-	2e+0	At5g50840	-	O.I.	H.G.	S.X.	Please select
0.42	60.1	1617911_at	At5g41720	hypothetical protein LOC100247972	-	9e-2	At5g53560	CB5-E (CYTOCHROME B5 ISOFORM E)	O.I.	H.G.	S.X.	Please select
0.40	57.7	1621749_x_at	At5g41720	-	-	1e+0	At4g29960	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	57.7	1607238_a_at	At5g41720	hypothetical protein LOC100246539	-	6e-1	At2g06925	PLA2-ALPHA	O.I.	H.G.	S.X.	Please select
0.39	54.9	1619346_at	At5g41720	hypothetical protein LOC100255325	-	3e-4	At3g44750	HDA3 (HISTONE DEACETYLASE 3)	O.I.	H.G.	S.X.	Please select
0.37	51.7	1611884_at	At5g41720	-	-	1e+0	At4g29960	unknown protein	O.I.	H.G.	S.X.	Please select
0.37	51.7	1614885_at	At5g41720	hypothetical protein LOC100248981	-	9e+0	At5g37240	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	48.5	1618702_at	At5g41720	-	-	6e-2	At2g41230	unknown protein	O.I.	H.G.	S.X.	Please select
0.34	46.8	1614669_at	At5g41720	-	-	1e+0	At2g15390	FUT4	O.I.	H.G.	S.X.	Please select
0.33	45.7	1607820_at	At5g41720	-	-	6e+0	At3g47836	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	43.1	1621367_at	At5g41720	-	-	1e+0	At2g29440	ATGSTU6 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 6)	O.I.	H.G.	S.X.	Please select
0.30	39.4	1610543_at	At5g41720	-	-	8e+0	At4g35280	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.	Please select
0.29	37.7	1613609_at	At5g41720	-	-	1e+0	At1g11230	unknown protein	O.I.	H.G.	S.X.	Please select
0.28	37.7	1621992_s_at	At5g41720	hypothetical protein LOC100259183	-	2e-11	At5g66290	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	32.0	1606497_at	At5g41720	hypothetical protein LOC100260899	-	1e-17	At2g30110	ATUBA1	O.I.	H.G.	S.X.	Please select
0.22	25.6	1611129_s_at	At5g41720	hypothetical protein LOC100261235	-	2e+0	At2g06200	AtGRF6 (GROWTH-REGULATING FACTOR 6)	O.I.	H.G.	S.X.	Please select
0.21	24.0	1618490_s_at	At5g41720	hypothetical protein LOC100241704	-	4e-4	At2g29050	ATRBL1 (Arabidopsis thaliana Rhomboid-like 1)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

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