CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID ZmAffx.908.1.A1_at

Gene name
Homology with Arabidopsis Similar to At5g41720: - (HF=8e-1)

Module size 6 genes

NF 0.35

%ile 36.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.44 55.7 0.94 ZmAffx.908.1.A1_at AI770943 - - 8e-1 At5g41720 - O.I. H.G. S.X.
0.77 92.1 0.94 Zm.12621.1.A1_at BU051165 - - 4e-9 At2g24580 sarcosine oxidase family protein O.I. H.G. S.X.
0.67 85.8 0.95 Zm.17558.1.S1_at CK370895 hypothetical protein LOC100273430 - 5e-5 At4g01050 hydroxyproline-rich glycoprotein family protein O.I. H.G. S.X.
0.67 85.8 0.97 Zm.12129.1.S1_at BM380039 - - 7e-1 At1g28330 DYL1 (DORMANCY-ASSOCIATED PROTEIN-LIKE 1) O.I. H.G. S.X.
0.21 15.5 0.95 Zm.1069.1.A1_at AW066696 myristoyl-acyl carrier protein thioesterase - 4e-1 At4g13050 acyl-(acyl carrier protein) thioesterase, putative / acyl-ACP thioesterase, putative / oleoyl-(acyl-carrier protein) hydrolase, putative / S-acyl fatty acid synthase thioesterase, putative O.I. H.G. S.X.
0.16 9.4 0.95 ZmAffx.830.1.A1_at AI770534 - - 6e+0 At5g40930 TOM20-4 (TRANSLOCASE OF OUTER MEMBRANE 20-4) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
20.2 99.3 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.6 99.3 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.6 99.1 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.8 98.8 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.5 98.8 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.3 98.8 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.1 98.2 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6 97.9 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9 97.7 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.4 94.9 GSM320458 protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g41720, orthologous to the query gene, ZmAffx.908.1.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.48 62.5 At5g41720 834175 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.88 94.0 At1g69860 843322 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:membrane;BPMFO O.I. H.G. S.X.
0.78 88.6 At1g78220 844158 GRF13 14-3-3 protein GF14 pi O.I. H.G. S.X.
0.67 81.6 At1g20940 838688 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.61 76.7 At3g25280 822122 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:membrane;PBMFO O.I. H.G. S.X.
0.50 65.3 At1g22670 838873 protease-associated zinc finger (C3HC4-type RING finger) family protein F:peptidase activity, protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFBV O.I. H.G. S.X.
0.40 50.8 At3g59610 825130 F-box family protein / jacalin lectin family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. H.G. S.X.
0.29 30.3 At3g62350 825408 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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