Co-expression analysis

Gene ID	ZmAffx.90.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At2g01755: unknown protein (HF=3e+0)
Module size	10 genes
NF	0.53
%ile	69.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.75	90.8	0.98	ZmAffx.90.1.A1_at	AI665360	-	-	3e+0	At2g01755	unknown protein	O.I.	H.G.	S.X.	Please select
0.75	90.8	0.99	Zm.1739.1.A1_at	BM337820	catalytic/ hydrolase	-	1e-1	At3g04590	DNA-binding family protein	O.I.	H.G.	S.X.	Please select
0.75	90.8	0.99	ZmAffx.1363.1.S1_at	11990232-91	-	-	0	Atcg01110	-	O.I.	H.G.	S.X.	Please select
0.58	75.1	0.99	Zm.824.1.A1_a_at	CF625698	-	-	4e-2	At4g14000	unknown protein	O.I.	H.G.	S.X.	Please select
0.57	75.1	0.99	ZmAffx.1336.1.S1_at	11990232-84	-	-	2e-46	Atcg01040	-	O.I.	H.G.	S.X.	Please select
0.48	61.3	0.99	ZmAffx.1468.1.S1_at	11990232-35	-	-	3e-34	Atcg00550	-	O.I.	H.G.	S.X.	Please select
0.43	52.8	0.99	Zm.13979.1.S1_at	AY106073.1	hypothetical protein LOC100273275	-	8e-22	At2g20130	LCV1 (LIKE COV 1)	O.I.	H.G.	S.X.	Please select
0.33	36.0	1.00	ZmAffx.140.1.A1_at	AI667779	-	-	8e-1	At2g26170	CYP711A1	O.I.	H.G.	S.X.	Please select
0.33	36.0	1.00	ZmAffx.146.1.S1_at	AI667826	-	-	2e-1	At4g21450	vesicle-associated membrane family protein / VAMP family protein	O.I.	H.G.	S.X.	Please select
0.22	16.9	0.99	Zm.9822.1.A1_at	BM348325	-	-	4e+0	At2g44700	kelch repeat-containing F-box family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
22.9	99.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.8	99.5	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.3	99.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.5	99.0	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.9	98.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.4	98.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.3	98.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.8	98.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.4	98.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.1	95.9	GSM320464	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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