Co-expression analysis

Gene ID ZmAffx.893.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At2g17500: auxin efflux carrier family protein (HF=3e+0)
Module size 6 genes
NF 0.18
%ile 13.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.00.99ZmAffx.893.1.A1_atAI770864--3e+0At2g17500auxin efflux carrier family proteinO.I.H.G.S.X.
0.3641.31.00Zm.8311.2.A1_a_atBM073622--4e+0At4g23090unknown proteinO.I.H.G.S.X.
0.2724.61.00Zm.15242.1.A1_atBM340075--1e+1At3g16712unknown proteinO.I.H.G.S.X.
0.2014.20.99Zm.2805.1.A1_atAW352682hypothetical protein LOC100274443-5e+0At4g13266unknown proteinO.I.H.G.S.X.
0.104.60.99Zm.14692.1.A1_s_atBQ539260hypothetical protein LOC100276042-5e+0At1g09195-O.I.H.G.S.X.
0.083.40.99Zm.1368.1.A1_atCA399867calcineurin B-like protein 3-3e-40At5g55990CBL2 (CALCINEURIN B-LIKE 2)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
19.499.3GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
17.299.1GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
15.899.0GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
15.398.9GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.798.8GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.098.6GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.098.5GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.698.4GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.498.4GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.398.0GSM290555CCR mutant M1 with array type maize from AffymetrixGSE11531Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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