Co-expression analysis

Gene ID	ZmAffx.871.1.S1_at
Gene name	hypothetical protein LOC100273239
Homology with Arabidopsis	Similar to At1g69760: unknown protein (HF=8e-1)
Module size	10 genes
NF	0.25
%ile	21.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.44	55.7	0.97	ZmAffx.871.1.S1_at	AI770769	hypothetical protein LOC100273239	-	8e-1	At1g69760	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	52.8	0.98	Zm.280.1.A1_at	U58208.1	Binding protein homolog1	-	0	At5g42020	BIP2	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.98	Zm.14120.1.S1_at	AY105834.1	-	-	7e-30	At1g71220	EBS1 (EMS-mutagenized bri1 suppressor 1)	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.98	Zm.6929.1.A1_a_at	BG842822	CDPK substrate protein 1	-	3e-5	At5g29000	myb family transcription factor	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.99	Zm.18385.1.S1_at	CO530624	hypothetical protein LOC100276763	-	1e-1	At3g47810	MAG1 (MAIGO 1)	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.98	Zm.4471.5.A1_at	BF729171	protein kinase APK1B	-	2e-2	At3g47510	unknown protein	O.I.	H.G.	S.X.	Please select
0.17	10.6	0.97	Zm.9900.1.A1_at	BM351046	-	-	2e-2	At5g28610	-	O.I.	H.G.	S.X.	Please select
0.17	10.6	0.98	Zm.2611.1.A1_a_at	BM348249	hypothetical protein LOC100278318	-	3e-1	At1g49820	ATMTK (ARABIDOPSIS THALIANA S-METHYL-5-THIORIBOSE KINASE)	O.I.	H.G.	S.X.	Please select
0.16	9.4	0.98	Zm.6726.2.A1_at	AY112394.1	-	-	1e-1	At5g16250	unknown protein	O.I.	H.G.	S.X.	Please select
0.15	8.6	0.97	ZmAffx.900.1.S1_at	AI770893	-	-	1e+1	At5g19480	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.9	98.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.3	98.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.3	98.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.9	98.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.8	98.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.4	98.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.4	98.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.5	98.6	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.3	98.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.7	95.4	GSM320467	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage