Co-expression analysis

Gene ID ZmAffx.852.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At3g12690: AGC1.5 (AGC KINASE 1.5) (HF=1e-11)
Module size 6 genes
NF 0.20
%ile 14.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8395.60.99ZmAffx.852.1.A1_atAI770652--1e-11At3g12690AGC1.5 (AGC KINASE 1.5)O.I.H.G.S.X.
0.4658.40.99ZmAffx.208.1.S1_atAI670216--6e-1At5g15460MUB2 (MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 2)O.I.H.G.S.X.
0.3029.80.99Zm.13740.1.A1_atAW330707--2e-16At2g29140APUM3 (Arabidopsis Pumilio 3)O.I.H.G.S.X.
0.2318.60.99ZmAffx.898.1.A1_atAI770889--8e-1At3g15280unknown proteinO.I.H.G.S.X.
0.147.70.99ZmAffx.406.9.A1_atAI670512--1e+1At5g16580BGLU2 (BETA GLUCOSIDASE 2)O.I.H.G.S.X.
0.083.40.99Zm.4166.1.A1_atBG841131hypothetical protein LOC100191831-1e+0At1g17145protein binding / zinc ion bindingO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5065.70.99Zm.2306.2.S1_atAW331424--9e+0At5g15760plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putativeO.I.H.G.S.X.
0.5065.70.99RPTR-Zm-L36849-1_atRPTR-Zm-L36849-1---O.I.H.G.S.X.
0.4658.40.99Zm.19151.1.S1_atCO522803hypothetical protein LOC100217264-2e-1At5g61270PIF7 (PHYTOCHROME-INTERACTING FACTOR7)O.I.H.G.S.X.
0.4455.70.99Zm.18279.1.S1_atCO519886hypothetical protein LOC100276929-7e-1At5g06080LBD33 (LOB DOMAIN-CONTAINING PROTEIN 33)O.I.H.G.S.X.
0.4455.70.99ZmAffx.241.1.A1_atAI670253--3e+0At1g75190unknown proteinO.I.H.G.S.X.
0.4455.70.99ZmAffx.480.1.A1_atAI677621transmembrane 9 superfamily protein member 4-8e-1At1g18871unknown proteinO.I.H.G.S.X.
0.4251.30.99Zm.11799.1.A1_atCK985664hypothetical protein LOC100192656-1e+0At5g41908unknown proteinO.I.H.G.S.X.
0.4251.30.99Zm.13669.2.A1_atBM350396--2e-9At4g02630protein kinase family proteinO.I.H.G.S.X.
0.4048.50.99ZmAffx.745.1.A1_atAI745776--3e+0At5g17650glycine/proline-rich proteinO.I.H.G.S.X.
0.4048.50.99Zm.2521.1.A1_atCO519789hypothetical protein LOC100276170-1e-2At5g63980SAL1O.I.H.G.S.X.
0.4048.50.99Zm.4744.1.A1_atCA402773FHA domain containing protein-5e+0At4g32270unknown proteinO.I.H.G.S.X.
0.4048.50.99Zm.2914.1.S1_atAW091221--4e-1At1g23410ubiquitin extension protein, putative / 40S ribosomal protein S27A (RPS27aA)O.I.H.G.S.X.
0.4048.50.99Zm.1581.1.S1_atAW566202--1e+1At3g43153cAMP-dependent protein kinase inhibitor-relatedO.I.H.G.S.X.
0.4048.50.99ZmAffx.758.1.S1_atAI746000--3e-3At4g22260IM (IMMUTANS)O.I.H.G.S.X.
0.3945.60.99Zm.17199.1.A1_atCK370582hypothetical protein LOC100191930-2e-10At3g27960kinesin light chain-relatedO.I.H.G.S.X.
0.3641.30.99ZmAffx.839.1.A1_atAI770590--1e-5At2g19170SLP3O.I.H.G.S.X.
0.3641.30.99Zm.8478.2.A1_atBM381399hypothetical protein LOC100275408-1e+0At3g27890NQR (NADPH:QUINONE OXIDOREDUCTASE)O.I.H.G.S.X.
0.3641.30.99Zm.3749.1.S1_atAW566504myb-like DNA-binding domain containing protein-5e-1At1g30455protein binding / transcription activator/ transcription regulator/ translation initiation factor/ zinc ion bindingO.I.H.G.S.X.
0.3336.00.99Zm.4452.1.A1_atAI691174--4e+0At3g57740protein kinase family proteinO.I.H.G.S.X.
0.3336.00.99ZmAffx.992.1.A1_atAI855055--8e-1At2g02570nucleic acid bindingO.I.H.G.S.X.
0.3336.00.99Zm.19165.1.S1_atCF047794nitric oxide synthase interacting protein-6e-4At1g61620phosphoinositide bindingO.I.H.G.S.X.
0.3336.00.99Zm.11660.1.A1_atBM379753--2e-9At5g36880acetyl-CoA synthetase, putative / acetate-CoA ligase, putativeO.I.H.G.S.X.
0.3233.40.99ZmAffx.124.1.S1_atAI665883--1e+1At5g42070unknown proteinO.I.H.G.S.X.
0.2928.10.99ZmAffx.701.1.A1_atAI737983hypothetical protein LOC100274433-2e-1At1g03170unknown proteinO.I.H.G.S.X.
0.2928.10.99ZmAffx.795.1.A1_atAI770340--3e-3At5g46350WRKY8O.I.H.G.S.X.
0.2928.10.99ZmAffx.794.1.A1_atAI770336--8e-1At3g21890zinc finger (B-box type) family proteinO.I.H.G.S.X.
0.2928.10.99Zm.19021.1.A1_atCO531319virulence-related protein Nf314-9e-7At2g35780scpl26 (serine carboxypeptidase-like 26)O.I.H.G.S.X.
0.2724.60.99Zm.3848.1.S1_atBQ578139hypothetical protein LOC100276006-1e+0At4g13955-O.I.H.G.S.X.
0.2724.60.99Zm.3843.1.S1_atAW054469hypothetical protein LOC100216880-2e+0At4g19720glycosyl hydrolase family 18 proteinO.I.H.G.S.X.
0.2724.60.99Zm.12875.1.A1_atCA400938--5e-1At5g17650glycine/proline-rich proteinO.I.H.G.S.X.
0.2724.60.99Zm.942.1.A1_atBF729545seed maturation protein-3e-1At2g33735DNAJ heat shock N-terminal domain-containing proteinO.I.H.G.S.X.
0.2724.60.99Zm.2310.1.S1_atCK371642--3e+0At3g56070ROC2 (ROTAMASE CYCLOPHILIN 2)O.I.H.G.S.X.
0.2724.60.99Zm.11891.1.A1_atBM381583helix-loop-helix DNA-binding domain containing protein-6e-2At5g42420transporter-relatedO.I.H.G.S.X.
0.2724.60.99Zm.1139.1.A1_atBM341508hypothetical protein LOC100193402-9e-2At3g06750hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.2622.70.98Zm.455.1.S1_a_atAF135014.1dihydrolipoyllysine-residue acetyltransferase component of pyruvatedehydrogenase complex /// dihydrolipoamide S-acetyltransferase-8e-20At3g13930dihydrolipoamide S-acetyltransferase, putativeO.I.H.G.S.X.
0.2622.70.99Zm.3804.1.S1_atAW061673chalcone synthase G-3e-3At4g34850chalcone and stilbene synthase family proteinO.I.H.G.S.X.
0.2521.30.98Zm.7954.1.A1_atBM080605--4e+0At2g37240-O.I.H.G.S.X.
0.2521.30.98ZmAffx.854.1.S1_atAI770665hypothetical protein LOC100273705-5e-8At4g24780pectate lyase family proteinO.I.H.G.S.X.
0.2521.30.99Zm.9950.1.A1_atBM350675--5e+0At4g28020unknown proteinO.I.H.G.S.X.
0.2521.30.99Zm.4896.1.A1_x_atBM350512IAA13 - auxin-responsive Aux/IAA family member-3e-9At4g14550IAA14 (INDOLE-3-ACETIC ACID INDUCIBLE 14)O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.699.0GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.398.9GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.898.8GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.098.7GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.198.6GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.898.5GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.398.2GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.198.2GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.198.2GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.494.9GSM202304B73 immature ear tissue, biological replicate 3GSE8176Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear dataLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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