Co-expression analysis

Gene ID ZmAffx.832.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At5g51990: CBF4 (C- REPEAT-BINDING FACTOR 4) (HF=5e-2)
Module size 11 genes
NF 0.12
%ile 7.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5976.10.91ZmAffx.832.1.A1_atAI770560--5e-2At5g51990CBF4 (C- REPEAT-BINDING FACTOR 4)O.I.H.G.S.X.
0.5065.70.92Zm.9892.1.A1_atBM351413--6e-3At3g59060PIL6 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 6)O.I.H.G.S.X.
0.1912.80.95Zm.18417.1.A1_atCO528437RNA-binding region-containing protein 1-3e-1At5g64400-O.I.H.G.S.X.
0.169.40.92Zm.10195.1.A1_atBM349209--5e+0At4g11350transferase, transferring glycosyl groupsO.I.H.G.S.X.
0.158.60.95Zm.19103.1.A1_atAY104453.1Hypothetical protein LOC100193224-3e+0At4g09490RNase H domain-containing proteinO.I.H.G.S.X.
0.136.80.93Zm.4619.1.A1_atCD439136--1e-10At4g31120SKB1 (SHK1 BINDING PROTEIN 1)O.I.H.G.S.X.
0.125.90.95Zm.6393.1.A1_x_atBM267711H1 histone-6e-1At1g71290F-box family protein-relatedO.I.H.G.S.X.
0.104.60.92Zm.12406.1.S1_atBM350949hypothetical protein LOC100191616-3e-3At2g47700zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.104.60.95Zm.11728.1.A1_atBM380252--5e+0At4g36460unknown proteinO.I.H.G.S.X.
0.083.40.95Zm.11907.1.S1_atCK370738hypothetical protein LOC100194010-2e-15At3g24090glutamine-fructose-6-phosphate transaminase (isomerizing)/ sugar binding / transaminaseO.I.H.G.S.X.
0.051.90.91Zm.4664.3.A1_x_atAY108266.1--4e+0At5g65070MAF4 (MADS AFFECTING FLOWERING 4)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.899.0GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
15.899.0GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.698.8GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.798.6GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.698.6GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.398.5GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.998.5GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.398.4GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.398.4GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.695.2GSM385709Deep-sowing 10d treatment TIBA, biological rep1GSE15371Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowingLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



Back to the CoP portal site

Back to the KAGIANA project homepage