Co-expression analysis

Gene ID ZmAffx.825.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At3g06455: splicing factor-related (HF=5e-2)
Module size 13 genes
NF 0.76
%ile 96.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5469.80.97ZmAffx.825.1.A1_atAI770513--5e-2At3g06455splicing factor-relatedO.I.H.G.S.X.
0.8996.80.97Zm.5051.1.A1_atAI600543nucleotide binding protein-5e+0At5g09990PROPEP5 (Elicitor peptide 5 precursor)O.I.H.G.S.X.
0.8996.80.98Zm.4021.1.A1_atAW231310hypothetical protein LOC100217057-7e-1At5g62610basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.8395.60.97Zm.2626.1.A1_atAY112337.1hypothetical protein LOC100193977-3e-1At5g47090unknown proteinO.I.H.G.S.X.
0.8194.30.97ZmAffx.1189.1.S1_atBE025258hypothetical protein LOC100274447-8e-1At3g04181unknown proteinO.I.H.G.S.X.
0.8094.00.97Zm.3520.1.A2_atBM078576--1e-94At4g40040histone H3.2O.I.H.G.S.X.
0.7992.80.97Zm.17358.1.A1_atCF624129PTD008 protein /// PTD008 protein-1e-1At3g09770zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.7992.80.97Zm.17441.1.A1_atBM268338--5e-1At5g06910ATJ6 (Arabidopsis J-domain protein 6)O.I.H.G.S.X.
0.7792.10.98Zm.18099.1.A1_atCF631457hypothetical protein LOC100216597-2e-3At5g48560basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.6986.50.97ZmAffx.212.1.A1_atAI670220--3e+0At5g21010ATBPM5 (BTB-POZ and MATH domain 5)O.I.H.G.S.X.
0.6986.50.98ZmAffx.1191.1.A1_atBE025269--5e-2At4g23720unknown proteinO.I.H.G.S.X.
0.6381.10.98ZmAffx.392.1.S1_atAI676820--1e+1At2g31035-O.I.H.G.S.X.
0.6381.10.98Zm.17700.1.S1_atCK369359--3e+0At5g20190bindingO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
21.799.4GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
20.699.3GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
19.599.3GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
17.799.1GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
16.499.0GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
15.999.0GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
15.198.9GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
15.198.9GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.698.9GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.596.3GSM320461protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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