Co-expression analysis

Gene ID	ZmAffx.820.1.A1_at
Gene name	Hypothetical protein LOC100217195
Homology with Arabidopsis	Similar to At5g23950: C2 domain-containing protein (HF=8e-1)
Module size	38 genes
NF	0.32
%ile	30.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.95	99.6	0.95	ZmAffx.820.1.A1_at	AI770463	Hypothetical protein LOC100217195	-	8e-1	At5g23950	C2 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.59	76.1	0.96	Zm.17704.1.A1_at	CK369736	-	-	2e-2	At5g23370	GRAM domain-containing protein / ABA-responsive protein-related	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.96	Zm.9810.2.A1_x_at	BM339684	-	-	3e+1	At5g55565	-	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.96	Zm.15462.1.S1_at	CD440622	heat shock 70 kDa protein 1	-	2e+0	At1g18730	NDF6 (NDH DEPENDENT FLOW 6)	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.97	Zm.1918.1.S1_at	AW520033	hypothetical protein LOC100216771	-	6e+0	At5g42900	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.96	Zm.12991.1.A1_at	CA402944	-	-	8e-2	At3g28230	-	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.97	Zm.1967.2.A1_at	CF637323	pre-mRNA-splicing factor prp45	-	6e-26	At1g77180	chromatin protein family	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.97	Zm.5985.3.S1_at	CF041948	-	-	4e-28	At4g16340	SPK1 (SPIKE1)	O.I.	H.G.	S.X.	Please select
0.37	42.3	0.97	Zm.11992.1.A1_at	BM382475	-	-	3e+0	At5g41614	unknown protein	O.I.	H.G.	S.X.	Please select
0.37	42.3	0.97	Zm.375.1.S1_at	AF057184.1	trypsin inhibitor	-	1e-1	At5g02440	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.97	Zm.12681.1.S1_at	CA399688	hypothetical protein LOC100278755	-	2e+0	At5g65670	IAA9 (INDOLE-3-ACETIC ACID INDUCIBLE 9)	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.96	Zm.13101.1.A1_at	CA405173	-	-	4e-4	At3g25420	scpl21 (serine carboxypeptidase-like 21)	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.97	Zm.12844.2.A1_a_at	CF623983	hypothetical protein LOC100194377	-	4e-10	At5g16540	ZFN3 (ZINC FINGER NUCLEASE 3)	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.97	Zm.8309.1.S1_at	CF626652	quinone oxidoreductase	-	3e-6	At4g21580	oxidoreductase, zinc-binding dehydrogenase family protein	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.96	Zm.4747.1.S1_a_at	AY105845.1	small nuclear ribonucleoprotein-associated protein B	-	3e-9	At5g44500	small nuclear ribonucleoprotein associated protein B, putative / snRNP-B, putative / Sm protein B, putative	O.I.	H.G.	S.X.	Please select
0.34	37.2	0.96	Zm.8139.1.A1_at	BM333845	rhodanese family protein	-	1e-1	At2g42220	rhodanese-like domain-containing protein	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.97	Zm.14293.1.S1_at	AY107455.1	hypothetical protein LOC100191275	-	9e+0	At5g06710	HAT14 (HOMEOBOX FROM ARABIDOPSIS THALIANA)	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.97	Zm.8362.1.A1_at	CK371486	elongin C	-	2e-3	At5g59140	SKP1 family protein	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.96	Zm.11761.1.A1_at	BM380541	-	-	1e+1	At4g10170	synaptobrevin-related family protein	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.97	Zm.9267.1.A1_at	BM267708	hypothetical protein AY107012 /// UPF0497 membrane protein 7	-	2e+0	At2g36210	auxin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.95	Zm.19080.1.A1_at	CO522397	membrane protein	-	1e-3	At2g29050	ATRBL1 (Arabidopsis thaliana Rhomboid-like 1)	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.96	Zm.13303.1.S1_at	CA827309	-	-	4e+0	At1g27390	TOM20-2 (TRANSLOCASE OUTER MEMBRANE 20-2)	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.96	Zm.12727.2.A1_at	AY104339.1	-	-	2e-8	At5g07360	amidase family protein	O.I.	H.G.	S.X.	Please select
0.30	29.8	0.97	ZmAffx.89.1.S1_at	AI665353	-	-	1e+1	At5g20560	beta-1,3-glucanase, putative	O.I.	H.G.	S.X.	Please select
0.30	29.8	0.97	Zm.13417.1.A1_at	CA400681	hypothetical protein LOC100193979	-	4e-1	At3g05830	-	O.I.	H.G.	S.X.	Please select
0.30	29.8	0.97	Zm.2150.1.A1_a_at	CD977294	Hypothetical protein LOC100193916	-	4e-33	At5g20920	EIF2 BETA	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.98	Zm.12736.2.A1_at	AI881252	-	-	5e+0	At4g25720	QC (GLUTAMINYL CYCLASE)	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.97	Zm.737.2.A1_at	AI746142	-	-	4e-6	At5g60360	AALP (Arabidopsis aleurain-like protease)	O.I.	H.G.	S.X.	Please select
0.25	21.3	0.95	Zm.18301.1.A1_at	CO530719	Cyclin D5,2	-	9e-2	At3g12480	NF-YC11 (NUCLEAR FACTOR Y, SUBUNIT C11)	O.I.	H.G.	S.X.	Please select
0.24	19.8	0.97	Zm.791.1.S1_s_at	AY111675.1	hypothetical protein LOC100280140	-	3e+0	At4g16720	60S ribosomal protein L15 (RPL15A)	O.I.	H.G.	S.X.	Please select
0.24	19.8	0.97	Zm.11598.1.A1_at	BM379212	-	-	1e+0	At5g11990	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.24	19.8	0.97	Zm.5737.1.S1_at	CF626358	hypothetical protein LOC100274927	-	1e-1	At1g02710	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.23	18.6	0.96	Zm.18369.1.S1_at	BQ618986	hypothetical protein LOC100193825 /// PCO071075 protein	-	9e-1	At3g53000	AtPP2-A15 (Phloem protein 2-A15)	O.I.	H.G.	S.X.	Please select
0.23	18.6	0.97	Zm.4783.1.S1_at	CK368500	mitochondrial import inner membrane translocase subunit Tim8	-	4e-7	At5g50810	TIM8	O.I.	H.G.	S.X.	Please select
0.22	16.9	0.96	ZmAffx.720.1.S1_at	AI739909	-	-	2e-1	At1g11572	-	O.I.	H.G.	S.X.	Please select
0.21	15.5	0.97	Zm.5133.1.S1_at	CO526428	hypothetical protein LOC100273486	-	2e-1	At1g01710	acyl-CoA thioesterase family protein	O.I.	H.G.	S.X.	Please select
0.19	12.8	0.96	Zm.6228.1.A1_at	AI739920	-	-	1e+0	At1g64370	unknown protein	O.I.	H.G.	S.X.	Please select
0.18	11.6	0.96	Zm.5995.2.S1_a_at	AI666102	-	-	2e+0	At4g14385	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
14.1	98.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.3	98.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.8	98.6	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.5	98.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.0	98.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.7	98.3	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5	98.1	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.0	98.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.8	97.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.2	96.9	GSM162267	Mutant 1 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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