Co-expression analysis

Gene ID	ZmAffx.815.1.A1_at
Gene name	Hypothetical protein LOC100191164
Homology with Arabidopsis	Similar to At4g27320: universal stress protein (USP) family protein (HF=3e+0)
Module size	16 genes
NF	0.58
%ile	77.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.72	88.6	0.99	ZmAffx.815.1.A1_at	AI770430	Hypothetical protein LOC100191164	-	3e+0	At4g27320	universal stress protein (USP) family protein	O.I.	H.G.	S.X.	Please select
0.79	92.8	1.00	Zm.5775.1.A1_at	AI649573	-	-	1e+1	At3g06600	unknown protein	O.I.	H.G.	S.X.	Please select
0.77	92.1	1.00	Zm.13664.1.S1_at	BG836397	-	-	6e-17	At3g15610	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.71	88.2	1.00	ZmAffx.1052.1.S1_at	AI881839	KH domain containing protein	-	3e+0	At1g75090	methyladenine glycosylase family protein	O.I.	H.G.	S.X.	Please select
0.69	86.5	1.00	Zm.53.1.S1_at	AB021176.1	root cap periphery gene2	-	2e-1	At3g19430	late embryogenesis abundant protein-related / LEA protein-related	O.I.	H.G.	S.X.	Please select
0.64	81.7	1.00	Zm.8632.1.A1_at	BM268513	-	-	5e+0	At3g55672	-	O.I.	H.G.	S.X.	Please select
0.63	81.1	0.99	Zm.3908.1.S1_at	CF036708	hypothetical protein LOC100193155	-	2e-3	At5g15750	RNA-binding S4 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.62	79.8	1.00	Zm.17267.1.S1_at	CK368940	hypothetical protein LOC100275082	-	5e-1	At1g80920	J8	O.I.	H.G.	S.X.	Please select
0.55	71.6	1.00	Zm.2146.1.A1_at	AW287813	-	-	5e+0	At5g35475	-	O.I.	H.G.	S.X.	Please select
0.53	69.1	1.00	Zm.5813.1.A1_at	CF056763	hypothetical protein LOC100191474	-	8e-32	At5g55310	TOP1BETA (DNA TOPOISOMERASE 1 BETA)	O.I.	H.G.	S.X.	Please select
0.52	67.3	1.00	Zm.6188.2.S1_at	AY108898.1	hypothetical protein LOC100194248	-	4e-2	At1g31140	agl63 (AGAMOUS-LIKE 63)	O.I.	H.G.	S.X.	Please select
0.52	67.3	1.00	Zm.16895.1.A1_at	BM075234	-	-	2e+0	At5g15100	PIN8 (PIN-FORMED 8)	O.I.	H.G.	S.X.	Please select
0.52	67.3	1.00	Zm.12405.1.A1_at	BM381554	alpha/beta hydrolase fold	-	2e+0	At1g64340	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	58.4	1.00	Zm.2463.2.S1_at	AW191411	hypothetical protein LOC100193981	-	3e+0	At2g14890	AGP9 (ARABINOGALACTAN PROTEIN 9)	O.I.	H.G.	S.X.	Please select
0.39	45.6	1.00	Zm.15937.1.A1_at	CO520791	-	-	5e+0	At3g25200	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	45.6	1.00	Zm.1368.1.A1_at	CA399867	calcineurin B-like protein 3	-	3e-40	At5g55990	CBL2 (CALCINEURIN B-LIKE 2)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
16.3	99.0	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.0	99.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.4	98.8	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.3	98.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.3	98.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.1	98.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.9	98.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.8	98.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.1	98.6	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.2	94.5	GSM320464	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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