Co-expression analysis

Gene ID	ZmAffx.777.1.A1_at
Gene name	hypothetical protein LOC100191464
Homology with Arabidopsis	Similar to At5g11440: CID5 (HF=2e-1)
Module size	18 genes
NF	0.48
%ile	60.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.74	90.3	0.97	ZmAffx.777.1.A1_at	AI746253	hypothetical protein LOC100191464	-	2e-1	At5g11440	CID5	O.I.	H.G.	S.X.	Please select
0.65	82.1	0.97	Zm.1519.1.S1_at	AF033263.1	blue-light receptor phototropin 1	-	5e-16	At3g45780	PHOT1 (PHOTOTROPIN 1)	O.I.	H.G.	S.X.	Please select
0.63	81.1	0.97	Zm.7644.2.S1_at	BM341428	-	-	4e+0	At5g23760	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please select
0.59	76.1	0.97	Zm.17862.1.A1_at	CO520595	serine/threonine-protein kinase WNK4	-	5e+0	At4g09440	unknown protein	O.I.	H.G.	S.X.	Please select
0.54	69.8	0.97	Zm.19120.1.A1_at	CO523709	hypothetical protein LOC100272621	-	4e-7	At3g20810	transcription factor jumonji (jmjC) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.98	Zm.12377.1.S1_at	BQ577907	-	-	1e+1	At3g10915	reticulon family protein	O.I.	H.G.	S.X.	Please select
0.48	61.3	0.97	Zm.5101.1.S1_at	AY110556.1	hypothetical protein LOC100193724	-	1e-3	At3g01300	protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.97	Zm.494.2.S1_at	BE056113	Prohibitin1	-	3e+0	At5g17510	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.97	Zm.15975.1.A1_at	AY109347.1	-	-	5e-2	At4g17560	ribosomal protein L19 family protein	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.97	Zm.2169.1.A1_at	BM079581	-	-	2e+0	At3g10250	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.97	Zm.2811.1.A1_at	CA402433	hypothetical protein LOC100279769	-	1e+0	At4g05100	AtMYB74 (myb domain protein 74)	O.I.	H.G.	S.X.	Please select
0.45	56.4	0.97	Zm.18405.1.A1_at	CO521227	hypothetical protein LOC100193248	-	3e+0	At5g01881	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	52.8	0.97	Zm.2861.1.A1_at	AW076444	retinoblastoma-binding protein-like	-	1e+0	At1g14310	haloacid dehalogenase-like hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.98	Zm.2076.2.A1_at	CF634644	hypothetical protein LOC100194265	-	2e-3	At3g04230	40S ribosomal protein S16 (RPS16B)	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.97	Zm.14833.1.A1_at	CF629020	-	-	7e+0	At5g10430	AGP4 (ARABINOGALACTAN PROTEIN 4)	O.I.	H.G.	S.X.	Please select
0.37	42.3	0.98	Zm.12674.1.A1_at	CN845329	-	-	5e-5	At1g34350	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	29.8	0.98	Zm.12433.1.S1_at	AY105016.1	tyrosyl-tRNA synthetase	-	4e-18	At2g33840	tRNA synthetase class I (W and Y) family protein	O.I.	H.G.	S.X.	Please select
0.30	29.8	0.97	Zm.15194.1.A1_at	BM334114	-	-	4e+0	At1g16025	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
14.3	98.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.5	98.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.1	98.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.0	98.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.3	98.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.2	98.2	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.5	97.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.3	97.8	GSM253279	ZM_8d_SG200_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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