Co-expression analysis

Gene ID ZmAffx.755.1.S1_at
Gene name
Homology with ArabidopsisSimilar to Atcg00800: - (HF=1e-27)
Module size 6 genes
NF 0.17
%ile 11.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.00.98ZmAffx.755.1.S1_atAI745946--1e-27Atcg00800-O.I.H.G.S.X.
0.2928.10.99ZmAffx.977.1.A1_atAI833949--8e-1At4g04630unknown proteinO.I.H.G.S.X.
0.2521.30.99Zm.7540.1.S1_atCF055286hypothetical protein LOC100192075-1e-5At4g29130HXK1 (HEXOKINASE 1)O.I.H.G.S.X.
0.115.30.99Zm.9850.1.A1_atBM332622--2e+0At1g20880RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.104.60.99ZmAffx.717.1.A1_atAI739812--8e-1At3g07565DNA bindingO.I.H.G.S.X.
0.062.30.99ZmAffx.1142.1.A1_atAW399873--2e+0At5g47550cysteine protease inhibitor, putative / cystatin, putativeO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.4658.40.99Zm.5324.1.A1_atAI619250hypothetical protein LOC100280067-3e-11At4g19710bifunctional aspartate kinase/homoserine dehydrogenase, putative / AK-HSDH, putativeO.I.H.G.S.X.
0.4658.40.99ZmAffx.898.1.A1_atAI770889--8e-1At3g15280unknown proteinO.I.H.G.S.X.
0.4455.70.99Zm.131.1.A1_atD83391.1siroheme uroporphyrinogen methyltransferase1-1e-3At5g40850UPM1 (UROPHORPHYRIN METHYLASE 1)O.I.H.G.S.X.
0.4048.50.99Zm.13693.1.S1_atAY106770.1--6e-54At4g02480AAA-type ATPase family proteinO.I.H.G.S.X.
0.3844.20.99Zm.7735.1.S1_atCF631408--5e-26At1g43890ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18)O.I.H.G.S.X.
0.3641.30.99Zm.3288.1.A1_atCK347415immediate-early protein RSP40-2e-2At3g09032unknown proteinO.I.H.G.S.X.
0.3336.00.99Zm.6429.1.A1_atAI834521hypothetical protein LOC100216891-2e-16At2g07690minichromosome maintenance family protein / MCM family proteinO.I.H.G.S.X.
0.3336.00.99Zm.19052.1.A1_atBM331958--1e+0At1g29780NLI interacting factor (NIF) family proteinO.I.H.G.S.X.
0.3131.60.99ZmAffx.406.8.S1_atAI670243--2e-1At5g06870PGIP2 (POLYGALACTURONASE INHIBITING PROTEIN 2)O.I.H.G.S.X.
0.3131.60.99Zm.14589.2.S1_atAI833927--8e-84At4g21710NRPB2O.I.H.G.S.X.
0.3029.80.98Zm.2579.1.A1_atAW017722hypothetical protein LOC100276855-2e-12At5g25265unknown proteinO.I.H.G.S.X.
0.2521.30.98Zm.18254.2.S1_atAY111047.1Hypothetical protein LOC100193290-2e+0At5g14370-O.I.H.G.S.X.
0.2521.30.99ZmAffx.282.2.A1_atAI670245--3e+0At5g09520hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.2521.30.99ZmAffx.406.13.S1_atAI670444--5e+0At2g40316unknown proteinO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.098.6GSM320456protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.098.6GSM320461protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.898.6GSM320459protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.698.6GSM320462protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.698.6GSM320464protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.998.5GSM320460protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.398.4GSM320463protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.898.3GSM320457protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.698.3GSM320458protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.598.1GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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