CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID ZmAffx.706.1.A1_at

Gene name
Homology with Arabidopsis Similar to At1g23590: unknown protein (HF=8e-1)

Module size 7 genes

NF 0.51

%ile 64.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.86 96.3 0.94 ZmAffx.706.1.A1_at AI738209 - - 8e-1 At1g23590 unknown protein O.I. H.G. S.X.
0.60 77.8 0.94 Zm.13737.2.S1_at AI065573 hypothetical protein LOC100272721 - 6e-54 At4g08900 arginase O.I. H.G. S.X.
0.59 76.1 0.93 Zm.1866.1.A1_at AW498013 - - 5e-7 At4g11270 transducin family protein / WD-40 repeat family protein O.I. H.G. S.X.
0.50 65.7 0.94 Zm.10798.1.A1_at CF003582 Hypothetical protein LOC100191405 - 1e-2 At1g26930 kelch repeat-containing F-box family protein O.I. H.G. S.X.
0.50 65.7 0.94 ZmAffx.1.1.S1_s_at AY722707.1 hypothetical LOC542518 - 5e-51 At1g57870 ATSK42 (ARABIDOPSIS SHAGGY-LIKE KINASE 42) O.I. H.G. S.X.
0.28 28.1 0.94 Zm.10799.1.S1_at AY108939.1 hypothetical protein LOC100192060 - 3e+0 At5g20110 dynein light chain, putative O.I. H.G. S.X.
0.25 21.3 0.94 Zm.14036.1.S1_at X55388.1 embryo specific protein1 - 3e-2 At2g40170 GEA6 (LATE EMBRYOGENESIS ABUNDANT 6) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.86	96.3	0.94	ZmAffx.706.1.A1_at	AI738209	-	-	8e-1	At1g23590	unknown protein	O.I.	H.G.	S.X.
0.60	77.8	0.94	Zm.13737.2.S1_at	AI065573	hypothetical protein LOC100272721	-	6e-54	At4g08900	arginase	O.I.	H.G.	S.X.
0.59	76.1	0.93	Zm.1866.1.A1_at	AW498013	-	-	5e-7	At4g11270	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.
0.50	65.7	0.94	Zm.10798.1.A1_at	CF003582	Hypothetical protein LOC100191405	-	1e-2	At1g26930	kelch repeat-containing F-box family protein	O.I.	H.G.	S.X.
0.50	65.7	0.94	ZmAffx.1.1.S1_s_at	AY722707.1	hypothetical LOC542518	-	5e-51	At1g57870	ATSK42 (ARABIDOPSIS SHAGGY-LIKE KINASE 42)	O.I.	H.G.	S.X.
0.28	28.1	0.94	Zm.10799.1.S1_at	AY108939.1	hypothetical protein LOC100192060	-	3e+0	At5g20110	dynein light chain, putative	O.I.	H.G.	S.X.
0.25	21.3	0.94	Zm.14036.1.S1_at	X55388.1	embryo specific protein1	-	3e-2	At2g40170	GEA6 (LATE EMBRYOGENESIS ABUNDANT 6)	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.60	77.8	0.93	Zm.17924.2.A1_a_at	AI677447	-	-	8e-17	At3g22590	RNA pol II accessory factor Cdc73 family protein	O.I.	H.G.	S.X.
0.57	75.1	0.91	Zm.3892.5.A1_at	BM079634	60S ribosomal protein L28	-	6e-7	At2g19730	60S ribosomal protein L28 (RPL28A)	O.I.	H.G.	S.X.
0.53	69.1	0.91	Zm.18522.1.A1_at	CO523120	hypothetical protein LOC100192876	-	6e+0	At4g34120	LEJ1 (LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 1)	O.I.	H.G.	S.X.
0.50	65.7	0.90	Zm.4084.1.A1_at	CK145425	CONSTANS interacting protein 6	-	8e-1	At5g28800	unknown protein	O.I.	H.G.	S.X.
0.50	65.7	0.92	ZmAffx.521.1.A1_at	AI711634	hypothetical protein LOC100193955	-	3e+0	At5g27880	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.
0.44	55.7	0.85	Zm.101.2.A1_at	AY105599.1	Ferredoxin-thioredoxin1	-	2e-6	At2g04700	ferredoxin thioredoxin reductase catalytic beta chain family protein	O.I.	H.G.	S.X.
0.44	55.7	0.89	Zm.10809.2.A1_a_at	BM337645	OB-fold nucleic acid binding domain containing protein	-	2e-18	At1g23750	DNA-binding protein-related	O.I.	H.G.	S.X.
0.44	55.7	0.93	Zm.18345.1.S1_at	CO522637	EMB2756	-	9e-4	At5g42660	unknown protein	O.I.	H.G.	S.X.
0.40	48.5	0.82	Zm.7472.1.A1_at	BM078895	hypothetical protein LOC100274148	-	2e+0	At4g23690	disease resistance-responsive family protein / dirigent family protein	O.I.	H.G.	S.X.
0.40	48.5	0.85	ZmAffx.1210.1.A1_at	BG841129	-	-	7e-2	At5g64230	unknown protein	O.I.	H.G.	S.X.
0.38	44.2	0.87	Zm.11906.1.A1_at	BM381688	-	-	1e-2	At5g06320	NHL3	O.I.	H.G.	S.X.
0.38	44.2	0.88	Zm.448.1.S1_at	AF126054.1	Rop3 small GTP binding protein	-	6e-8	At5g62880	ARAC10	O.I.	H.G.	S.X.
0.38	44.2	0.94	Zm.4541.1.S1_at	AY104176.1	hypothetical protein LOC100274427	-	5e-8	At5g67400	peroxidase 73 (PER73) (P73) (PRXR11)	O.I.	H.G.	S.X.
0.36	41.3	0.85	Zm.8721.1.A1_at	BM339688	catalytic/ oxidoreductase, acting on NADH or NADPH	-	3e-1	At1g10530	unknown protein	O.I.	H.G.	S.X.
0.36	41.3	0.87	Zm.1757.1.S1_at	BG841022	R2R3MYB-domain protein	-	8e-3	At2g16720	MYB7 (MYB DOMAIN PROTEIN 7)	O.I.	H.G.	S.X.
0.36	41.3	0.93	Zm.1347.1.S1_at	AY104392.1	calmodulin binding protein	-	6e-1	At2g40450	speckle-type POZ protein-related	O.I.	H.G.	S.X.
0.36	41.3	0.95	Zm.12387.1.S1_at	AW000286	-	-	2e+1	Atmg01300	-	O.I.	H.G.	S.X.
0.34	37.2	0.93	Zm.8584.1.A1_at	BM340099	-	-	4e+0	At2g31430	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.
0.33	36.0	0.91	Zm.1274.1.S1_at	CO533399	hypothetical protein LOC100272786	-	7e-1	At2g38550	unknown protein	O.I.	H.G.	S.X.
0.32	33.4	0.87	Zm.1296.1.S1_at	CF623659	hypothetical protein LOC100193371	-	7e-4	At5g62460	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.32	33.4	0.92	Zm.10516.1.S1_at	CF009232	-	-	5e+0	At5g03840	TFL1 (TERMINAL FLOWER 1)	O.I.	H.G.	S.X.
0.31	31.6	0.88	Zm.13386.1.S1_s_at	AF457988.1	penicillin-binding protein 2	-	5e-1	At3g54826	-	O.I.	H.G.	S.X.
0.31	31.6	0.89	Zm.12740.1.S1_at	CA404183	hypothetical protein LOC100194228	-	4e-12	At5g40440	ATMKK3 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 3)	O.I.	H.G.	S.X.
0.31	31.6	0.89	Zm.17571.1.A1_at	BM080258	-	-	4e-1	At1g57860	60S ribosomal protein L21	O.I.	H.G.	S.X.
0.30	29.8	0.85	Zm.13558.1.A1_at	BQ163517	-	-	1e-3	At1g26340	CB5-A (CYTOCHROME B5 ISOFORM A)	O.I.	H.G.	S.X.
0.27	24.6	0.91	Zm.1549.1.A1_at	AI612422	BCAS2 protein	-	6e-1	At3g22360	AOX1B	O.I.	H.G.	S.X.
0.25	21.3	0.94	Zm.354.2.S1_at	U37428.1	glossy1	-	5e-2	At4g19150	ankyrin repeat family protein	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
29.6 99.8 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
28.4 99.7 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
28.3 99.7 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.1 99.4 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.1 99.2 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.0 99.1 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.5 99.0 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.2 98.9 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.7 98.7 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.2 96.0 GSM320464 protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
29.6	99.8	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
28.4	99.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
28.3	99.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.1	99.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.1	99.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.0	99.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.5	99.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.2	98.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.7	98.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.2	96.0	GSM320464	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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Gene ID	ZmAffx.706.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At1g23590: unknown protein (HF=8e-1)
Module size	7 genes
NF	0.51
%ile	64.8

Co-expression analysis

Gene ID ZmAffx.706.1.A1_at Gene name Homology with ArabidopsisSimilar to At1g23590: unknown protein (HF=8e-1) Module size 7 genes NF 0.51 %ile 64.8

Co-expressed genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_vinifera

Gene ID ZmAffx.706.1.A1_at

Gene name
Homology with Arabidopsis Similar to At1g23590: unknown protein (HF=8e-1)

Module size 7 genes

NF 0.51

%ile 64.8

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera