Co-expression analysis

Gene ID	ZmAffx.706.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At1g23590: unknown protein (HF=8e-1)
Module size	7 genes
NF	0.51
%ile	64.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.86	96.3	0.94	ZmAffx.706.1.A1_at	AI738209	-	-	8e-1	At1g23590	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.94	Zm.13737.2.S1_at	AI065573	hypothetical protein LOC100272721	-	6e-54	At4g08900	arginase	O.I.	H.G.	S.X.	Please select
0.59	76.1	0.93	Zm.1866.1.A1_at	AW498013	-	-	5e-7	At4g11270	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.94	Zm.10798.1.A1_at	CF003582	Hypothetical protein LOC100191405	-	1e-2	At1g26930	kelch repeat-containing F-box family protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.94	ZmAffx.1.1.S1_s_at	AY722707.1	hypothetical LOC542518	-	5e-51	At1g57870	ATSK42 (ARABIDOPSIS SHAGGY-LIKE KINASE 42)	O.I.	H.G.	S.X.	Please select
0.28	28.1	0.94	Zm.10799.1.S1_at	AY108939.1	hypothetical protein LOC100192060	-	3e+0	At5g20110	dynein light chain, putative	O.I.	H.G.	S.X.	Please select
0.25	21.3	0.94	Zm.14036.1.S1_at	X55388.1	embryo specific protein1	-	3e-2	At2g40170	GEA6 (LATE EMBRYOGENESIS ABUNDANT 6)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
29.6	99.8	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
28.4	99.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
28.3	99.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.1	99.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.1	99.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.0	99.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.5	99.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.2	98.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.7	98.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.2	96.0	GSM320464	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the barley gene, HV04B19u_at, orthologous to the query gene, ZmAffx.706.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	90.8	HV04B19u_at	At1g23590	-	-	9e-1	At5g55507	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.83	94.0	Contig21789_at	At1g23590	-	-	3e-1	At4g39260	GR-RBP8	O.I.	H.G.	S.X.	Please select
0.50	66.9	Contig16356_at	At1g23590	-	-	2e+0	At5g19200	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	Contig18983_at	At1g23590	-	-	1e+0	At2g18465	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	EBem10_SQ003_N11_at	At1g23590	-	-	3e+0	At3g06770	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	O.I.	H.G.	S.X.	Please select
0.11	9.4	Contig11888_at	At1g23590	-	-	8e-1	At3g10260	reticulon family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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