CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID ZmAffx.706.1.A1_at

Gene name
Homology with Arabidopsis Similar to At1g23590: unknown protein (HF=8e-1)

Module size 7 genes

NF 0.51

%ile 64.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.86 96.3 0.94 ZmAffx.706.1.A1_at AI738209 - - 8e-1 At1g23590 unknown protein O.I. H.G. S.X.
0.60 77.8 0.94 Zm.13737.2.S1_at AI065573 hypothetical protein LOC100272721 - 6e-54 At4g08900 arginase O.I. H.G. S.X.
0.59 76.1 0.93 Zm.1866.1.A1_at AW498013 - - 5e-7 At4g11270 transducin family protein / WD-40 repeat family protein O.I. H.G. S.X.
0.50 65.7 0.94 Zm.10798.1.A1_at CF003582 Hypothetical protein LOC100191405 - 1e-2 At1g26930 kelch repeat-containing F-box family protein O.I. H.G. S.X.
0.50 65.7 0.94 ZmAffx.1.1.S1_s_at AY722707.1 hypothetical LOC542518 - 5e-51 At1g57870 ATSK42 (ARABIDOPSIS SHAGGY-LIKE KINASE 42) O.I. H.G. S.X.
0.28 28.1 0.94 Zm.10799.1.S1_at AY108939.1 hypothetical protein LOC100192060 - 3e+0 At5g20110 dynein light chain, putative O.I. H.G. S.X.
0.25 21.3 0.94 Zm.14036.1.S1_at X55388.1 embryo specific protein1 - 3e-2 At2g40170 GEA6 (LATE EMBRYOGENESIS ABUNDANT 6) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
29.6 99.8 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
28.4 99.7 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
28.3 99.7 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.1 99.4 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.1 99.2 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.0 99.1 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.5 99.0 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.2 98.9 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.7 98.7 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.2 96.0 GSM320464 protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At1g23590, orthologous to the query gene, ZmAffx.706.1.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
1.00 100.0 At1g23590 838969 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.94 96.7 At1g23520 838960 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.91 95.6 At3g52810 824447 PAP21 (PURPLE ACID PHOSPHATASE 21) F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:biological_process unknown;C:endomembrane system;PBMOFA O.I. H.G. S.X.
0.90 95.1 At5g61605 836282 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. H.G. S.X.
0.88 94.0 At1g30350 839915 pectate lyase family protein F:lyase activity, pectate lyase activity;P:biological_process unknown;C:endomembrane system;BPFO O.I. H.G. S.X.
0.88 94.0 At5g07540 830647 GRP16 (GLYCINE-RICH PROTEIN 16) encodes a glycine-rich protein that is expressed only in flowers during a specific developmental stage (flower stages 11 and 12). O.I. H.G. S.X.
0.86 93.1 At1g23250 838934 calcium ion binding F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;PFO O.I. H.G. S.X.
0.86 93.1 At1g23240 838933 caleosin-related family protein F:lipase activity, calcium ion binding;P:unknown;C:extracellular region;PFO O.I. H.G. S.X.
0.86 93.1 At5g07520 830645 GRP18 (GLYCINE-RICH PROTEIN 18) encodes a glycine-rich protein that is expressed only in flowers during a specific developmental stage (flower stage 12). O.I. H.G. S.X.
0.84 91.9 At1g23670 838977 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.84 91.9 At5g07530 830646 GRP17 (GLYCINE RICH PROTEIN 17) encodes a glycine-rich protein that has oleosin domain and is expressed specifically during flower stages 10 to 12. Protein is found on mature pollen coat. O.I. H.G. S.X.
0.82 90.9 At1g23600 838970 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.80 89.8 At1g28430 839741 CYP705A24 member of CYP705A O.I. H.G. S.X.
0.80 89.8 At5g07560 830649 GRP20 (GLYCINE-RICH PROTEIN 20) Lipid-binding oleosins, glycine-rich protein. O.I. H.G. S.X.
0.78 88.6 At3g26125 822212 CYP86C2 encodes a protein with cytochrome P450 domain O.I. H.G. S.X.
0.73 85.5 At1g75930 843926 EXL6 member of Lipase proteins O.I. H.G. S.X.
0.72 84.8 At2g23800 816912 GGPS2 (GERANYLGERANYL PYROPHOSPHATE SYNTHASE 2) encodes an endoplasmic reticulum-targeted geranylgeranyl pyrophosphate synthase O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage