Co-expression analysis

Gene ID	ZmAffx.70.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At2g37780: DC1 domain-containing protein (HF=8e-1)
Module size	6 genes
NF	0.44
%ile	52.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.99	ZmAffx.70.1.A1_at	AI665164	-	-	8e-1	At2g37780	DC1 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.99	Zm.301.2.A1_at	CO521836	hypothetical protein LOC100276367	-	4e-9	At2g34510	-	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.99	ZmAffx.788.1.A1_at	AI759113	-	-	8e-1	At4g33925	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	52.8	0.99	Zm.5425.1.S1_a_at	AY105598.1	-	-	1e+0	At1g08010	zinc finger (GATA type) family protein	O.I.	H.G.	S.X.	Please select
0.43	52.8	0.99	Zm.2234.1.S1_a_at	CO526542	hypothetical protein LOC100276749 /// hypothetical protein LOC100276758	-	2e+1	At5g53486	unknown protein	O.I.	H.G.	S.X.	Please select
0.19	12.8	0.99	Zm.4308.1.A1_at	AY112093.1	-	-	1e-1	At1g08390	nucleic acid binding	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.5	97.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.3	97.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1	97.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9	97.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.8	97.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.8	97.2	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.5	97.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.3	96.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.7	96.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.2	96.0	GSM320465	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the grape gene, 1607301_at, orthologous to the query gene, ZmAffx.70.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	1607301_at	At2g37780	-	-	1e+0	At5g56650	ILL1	O.I.	H.G.	S.X.	Please select
0.38	53.6	1610438_at	At2g37780	-	-	8e-2	At1g68725	AGP19 (ARABINOGALACTAN-PROTEIN 19)	O.I.	H.G.	S.X.	Please select
0.33	45.7	1620933_at	At2g37780	-	-	4e-3	At3g55500	ATEXPA16 (ARABIDOPSIS THALIANA EXPANSIN A16)	O.I.	H.G.	S.X.	Please select
0.17	18.2	1611130_at	At2g37780	-	-	3e+0	At5g55330	membrane bound O-acyl transferase (MBOAT) family protein / wax synthase-related	O.I.	H.G.	S.X.	Please select
0.13	13.3	1610930_at	At2g37780	-	-	3e-32	Atmg00030	-	O.I.	H.G.	S.X.	Please select
0.01	2.1	1612087_at	At2g37780	-	-	2e+0	At2g28140	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

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