Co-expression analysis

Gene ID	ZmAffx.684.1.A1_at
Gene name	transferase family protein
Homology with Arabidopsis	Similar to At5g40620: unknown protein (HF=1e+1)
Module size	35 genes
NF	0.49
%ile	62.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.85	95.9	0.84	ZmAffx.684.1.A1_at	AI734818	transferase family protein	-	1e+1	At5g40620	unknown protein	O.I.	H.G.	S.X.	Please select
0.70	87.0	0.85	Zm.16502.4.A1_at	CK986103	hypothetical protein LOC100277865 /// hypothetical protein LOC100280121	-	1e-1	At1g51080	unknown protein	O.I.	H.G.	S.X.	Please select
0.64	81.7	0.87	Zm.18251.1.A1_at	CN845321	-	-	5e-3	At5g66080	protein phosphatase 2C family protein / PP2C family protein	O.I.	H.G.	S.X.	Please select
0.64	81.7	0.90	Zm.3966.1.A1_at	AI795713	-	-	5e-2	At1g56310	3'-5' exonuclease domain-containing protein	O.I.	H.G.	S.X.	Please select
0.64	81.7	0.89	Zm.34.2.A1_at	AY103769.1	nuclear cap-binding protein subunit 2	-	1e-13	At5g44200	CBP20 (CAP-BINDING PROTEIN 20)	O.I.	H.G.	S.X.	Please select
0.61	79.5	0.84	ZmAffx.29.1.A1_at	AI657322	-	-	2e-1	At1g65445	transferase-related	O.I.	H.G.	S.X.	Please select
0.61	79.5	0.93	Zm.11965.1.A1_at	BM382230	hypothetical protein LOC100275559	-	2e+0	At1g06070	bZIP transcription factor, putative (bZIP69)	O.I.	H.G.	S.X.	Please select
0.59	76.1	0.85	Zm.5048.9.S1_at	AI600956	hypothetical protein LOC100191158	-	1e-5	At5g45410	unknown protein	O.I.	H.G.	S.X.	Please select
0.59	76.1	0.87	Zm.704.1.S1_at	U15781.1	xyloglucan endotransglycosylase homolog1	-	3e-6	At5g57550	XTR3 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 3)	O.I.	H.G.	S.X.	Please select
0.57	75.1	0.90	Zm.19194.1.A1_at	CO519708	-	-	1e-11	At3g10050	OMR1 (L-O-METHYLTHREONINE RESISTANT 1)	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.91	RPTR-Zm-J01347-2_at	RPTR-Zm-J01347-2	-	-			-	O.I.	H.G.	S.X.	Please select
0.54	69.8	0.91	Zm.610.1.A1_at	AF326498.1	small basic membrane intrinsic protein1b	-	1e-1	At4g16360	AMP-activated protein kinase	O.I.	H.G.	S.X.	Please select
0.53	69.1	0.89	Zm.16892.3.S1_a_at	CB281906	calmodulin binding protein	-	5e-3	At3g22190	IQD5 (IQ-domain 5)	O.I.	H.G.	S.X.	Please select
0.53	69.1	0.91	RPTR-Zm-J01347-1_at	RPTR-Zm-J01347-1	-	-			-	O.I.	H.G.	S.X.	Please select
0.49	61.9	0.92	RPTR-Zm-ECOLOXL_x_at	RPTR-Zm-ECOLOXL	-	-			-	O.I.	H.G.	S.X.	Please select
0.49	61.9	0.93	RPTR-Zm-ECOLOXB_x_at	RPTR-Zm-ECOLOXB	-	-			-	O.I.	H.G.	S.X.	Please select
0.48	61.3	0.89	ZmAffx.920.1.A1_at	AI783286	-	-	7e-1	At5g16650	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.48	61.3	0.89	ZmAffx.782.1.S1_at	AI759014	-	-	8e-1	At2g46455	-	O.I.	H.G.	S.X.	Please select
0.48	61.3	0.91	Zm.2165.1.A1_at	BM072875	hypothetical protein LOC100278701	-	6e+0	At5g25390	SHN2 (shine2)	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.93	RPTR-Zm-ECOLOXL_at	RPTR-Zm-ECOLOXL	-	-			-	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.93	RPTR-Zm-J01347-3_at	RPTR-Zm-J01347-3	-	-			-	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.85	Zm.6491.1.S1_at	CA405051	hypothetical protein LOC100194281	-	1e-17	At3g22425	IGPD	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.93	RPTR-Zm-J01347-1_s_at	RPTR-Zm-J01347-1	-	-			-	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.88	Zm.11654.1.A1_at	CK347373	hypothetical protein LOC100280135	-	1e-5	At3g54420	ATEP3	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.86	Zm.15807.1.A1_at	AY111212.1	-	-	1e+0	At4g19590	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.41	49.7	0.88	ZmAffx.740.1.A1_at	AI740113	hypothetical protein LOC100192706	-	3e+0	At3g53630	unknown protein	O.I.	H.G.	S.X.	Please select
0.41	49.7	0.89	ZmAffx.1168.1.S1_s_at	AW600602	early fruit mRNA	-	2e-1	At5g16380	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.91	ZmAffx.617.1.S1_at	AI715045	-	-	2e-1	At5g09600	SDH3-1	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.90	ZmAffx.265.1.A1_at	AI670393	-	-	3e+0	At3g45770	oxidoreductase, zinc-binding dehydrogenase family protein	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.90	ZmAffx.535.1.A1_at	AI711782	-	-	2e-1	At1g23270	unknown protein	O.I.	H.G.	S.X.	Please select
0.37	42.3	0.92	ZmAffx.1.1.S1_at	AY722707.1	hypothetical LOC542518	-	5e-51	At1g57870	ATSK42 (ARABIDOPSIS SHAGGY-LIKE KINASE 42)	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.87	ZmAffx.426.1.A1_at	AI676860	-	-	5e-2	At5g43210	endo/excinuclease amino terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.34	37.2	0.88	Zm.6612.1.S1_at	AI444726	hypothetical protein LOC100279969	-	2e-1	At1g64380	AP2 domain-containing transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.89	ZmAffx.675.1.A1_at	AI734494	-	-	3e+0	At4g24700	unknown protein	O.I.	H.G.	S.X.	Please select
0.28	28.1	0.88	Zm.1397.1.S1_at	CF051873	-	-	3e-12	At3g15380	choline transporter-related	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
15.3	98.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.6	98.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.8	98.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.0	98.6	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.4	98.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.2	98.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.8	97.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.4	97.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.7	95.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.5	95.1	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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