Co-expression analysis

Gene ID ZmAffx.666.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At5g56795: MT1B (HF=3e+0)
Module size 6 genes
NF 0.02
%ile 0.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.00.81ZmAffx.666.1.A1_atAI734351--3e+0At5g56795MT1BO.I.H.G.S.X.
0.3641.30.93Zm.2768.1.A1_atAW067159Hypothetical protein LOC100193535-1e+0At5g04760myb family transcription factorO.I.H.G.S.X.
0.2419.80.90Zm.17361.1.S1_atCK370908--5e-19At3g55320PGP20 (P-GLYCOPROTEIN 20)O.I.H.G.S.X.
0.1811.60.88ZmAffx.372.1.A1_atAI673888anther-specific protein SF18-8e-1At3g59680unknown proteinO.I.H.G.S.X.
0.062.30.92Zm.12511.1.S1_atAW062063hypothetical protein LOC100276976-5e+0At5g53110-O.I.H.G.S.X.
0.010.30.86Zm.16266.1.S1_atCF243553--2e+0At4g24160hydrolase, alpha/beta fold family proteinO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5571.60.82ZmAffx.420.1.S1_atAI676852--1e+1At5g16470zinc finger (C2H2 type) family proteinO.I.H.G.S.X.
0.5065.70.83Zm.11859.1.S1_atCN844838diphthamide biosynthesis protein 3-2e-2At2g15910CSL zinc finger domain-containing proteinO.I.H.G.S.X.
0.5065.70.83Zm.10039.1.A1_atCF631889--5e+0At3g02580STE1 (STEROL 1)O.I.H.G.S.X.
0.5065.70.85ZmAffx.415.1.S1_atAI670503--1e+1At5g67450AZF1 (ARABIDOPSIS ZINC-FINGER PROTEIN 1)O.I.H.G.S.X.
0.4455.70.84Zm.1002.2.S1_a_atCD438956PHD finger protein-3e-11At5g26210AL4 (ALFIN-LIKE 4)O.I.H.G.S.X.
0.4352.80.85Zm.9553.1.A1_atBM266501hypothetical protein LOC100277290-3e-2At2g01090ubiquinol-cytochrome C reductase complex 7.8 kDa protein, putative / mitochondrial hinge protein, putativeO.I.H.G.S.X.
0.4048.50.81Zm.8465.1.A1_atBM267044hypothetical protein LOC100273253-2e-6At3g46560TIM9O.I.H.G.S.X.
0.4048.50.92Zm.17767.1.A1_atCK371577hypothetical protein LOC100191424-4e-1At2g14365LCR84 (Low-molecular-weight cysteine-rich 84)O.I.H.G.S.X.
0.3641.30.85ZmAffx.388.1.A1_atAI673984hypothetical protein LOC100279879-3e+0At5g18270ANAC087O.I.H.G.S.X.
0.3641.30.86Zm.8756.1.A1_atBM333012--4e+0At1g17860trypsin and protease inhibitor family protein / Kunitz family proteinO.I.H.G.S.X.
0.3336.00.92Zm.3498.1.A1_a_atCK367906metallothionein1-2e+0At5g64690neurofilament triplet H protein-relatedO.I.H.G.S.X.
0.3336.00.95Zm.12936.1.A1_atAY108987.1--7e-1At3g21338unknown proteinO.I.H.G.S.X.
0.3131.60.84Zm.4505.1.S1_atAY111153.1--2e-2At3g55600-O.I.H.G.S.X.
0.3131.60.94Zm.12977.2.S1_atAI677017Hypothetical protein LOC100193319-5e-5At1g15370-O.I.H.G.S.X.
0.2724.60.84ZmAffx.453.1.A1_atAI677167ligatin-1e-2At1g71350eukaryotic translation initiation factor SUI1 family proteinO.I.H.G.S.X.
0.2724.60.89Zm.13485.1.S1_atAY108893.1--3e-1At5g16540ZFN3 (ZINC FINGER NUCLEASE 3)O.I.H.G.S.X.
0.2521.30.84Zm.9447.1.A1_atBM268960--2e+1At4g18070unknown proteinO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.098.8GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.798.8GSM320458protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.798.8GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.698.8GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.398.8GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.098.7GSM320463protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.798.7GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.398.7GSM320457protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.298.6GSM320456protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.098.6GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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