Co-expression analysis

Gene ID	ZmAffx.618.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At5g46940: invertase/pectin methylesterase inhibitor family protein (HF=1e+1)
Module size	22 genes
NF	0.36
%ile	38.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.84	ZmAffx.618.1.A1_at	AI715046	-	-	1e+1	At5g46940	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.	Please select
0.53	69.1	0.91	Zm.34.2.A1_at	AY103769.1	nuclear cap-binding protein subunit 2	-	1e-13	At5g44200	CBP20 (CAP-BINDING PROTEIN 20)	O.I.	H.G.	S.X.	Please select
0.48	61.3	0.94	Zm.11965.1.A1_at	BM382230	hypothetical protein LOC100275559	-	2e+0	At1g06070	bZIP transcription factor, putative (bZIP69)	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.89	Zm.9130.1.A1_at	BM268570	-	-	7e-2	At3g62220	serine/threonine protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.43	52.8	0.86	ZmAffx.309.1.S1_at	AI670442	-	-	1e+1	At5g56150	UBC30 (ubiquitin-conjugating enzyme 30)	O.I.	H.G.	S.X.	Please select
0.43	52.8	0.92	Zm.3966.1.A1_at	AI795713	-	-	5e-2	At1g56310	3'-5' exonuclease domain-containing protein	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.89	Zm.5048.9.S1_at	AI600956	hypothetical protein LOC100191158	-	1e-5	At5g45410	unknown protein	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.91	Zm.19194.1.A1_at	CO519708	-	-	1e-11	At3g10050	OMR1 (L-O-METHYLTHREONINE RESISTANT 1)	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.83	Zm.4959.1.A1_at	AY105637.1	hypothetical protein LOC100216833	-	3e-67	At5g50320	ELO3 (ELONGATA 3)	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.93	Zm.1079.5.A1_a_at	M95073.1	-	-	6e-3	At1g23730	BCA3 (BETA CARBONIC ANHYDRASE 4)	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.89	ZmAffx.452.1.A1_at	AI677152	-	-	3e-6	At3g03380	DegP7 (DegP protease 7)	O.I.	H.G.	S.X.	Please select
0.37	42.3	0.81	ZmAffx.43.1.S1_at	AI664875	-	-	1e-5	At5g06830	unknown protein	O.I.	H.G.	S.X.	Please select
0.34	37.2	0.92	ZmAffx.535.1.A1_at	AI711782	-	-	2e-1	At1g23270	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.86	ZmAffx.370.1.S1_at	AI673868	-	-	3e+0	At2g42610	LSH10 (LIGHT SENSITIVE HYPOCOTYLS 10)	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.92	Zm.17308.1.A1_a_at	CF625691	-	-	2e+0	At1g64350	SEH1H	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.97	Zm.14226.1.A1_at	BM337251	hypothetical protein LOC100273457	-	3e-2	At3g20100	CYP705A19	O.I.	H.G.	S.X.	Please select
0.30	29.8	0.96	Zm.17308.1.A1_at	CF625691	-	-	2e+0	At1g64350	SEH1H	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.86	Zm.13913.1.S1_s_at	AF073332.1	ROA protein 1 /// replication origin activator 2 /// replication origin activator 4	-	8e-11	At5g46280	DNA replication licensing factor, putative	O.I.	H.G.	S.X.	Please select
0.28	28.1	0.88	Zm.2165.1.A1_at	BM072875	hypothetical protein LOC100278701	-	6e+0	At5g25390	SHN2 (shine2)	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.94	Zm.16892.3.S1_a_at	CB281906	calmodulin binding protein	-	5e-3	At3g22190	IQD5 (IQ-domain 5)	O.I.	H.G.	S.X.	Please select
0.20	14.2	0.92	ZmAffx.940.1.S1_at	AI820350	hypothetical protein LOC100217004	-	8e-4	At4g00690	ULP1B (UB-LIKE PROTEASE 1B)	O.I.	H.G.	S.X.	Please select
0.14	7.7	0.88	Zm.9142.1.A1_at	BM341036	-	-	4e-1	At3g23170	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
15.8	99.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.5	99.0	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.6	98.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.8	98.8	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.6	98.8	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.2	98.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.8	98.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.6	98.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.4	98.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.9	96.7	GSM320468	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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