Co-expression analysis

Gene ID ZmAffx.60.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At2g41650: unknown protein (HF=8e-1)
Module size 7 genes
NF 0.38
%ile 41.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7389.90.90ZmAffx.60.1.A1_atAI665094--8e-1At2g41650unknown proteinO.I.H.G.S.X.
0.4455.70.94Zm.9031.1.S1_atCD441372chloroplast Cu-Zn superoxide dismutase-8e-37At2g28190CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2)O.I.H.G.S.X.
0.4455.70.97Zm.2321.3.A1_a_atBG841291hypothetical protein LOC100191581 /// hypothetical protein LOC100274569-3e-9At3g23050IAA7 (INDOLE-3-ACETIC ACID 7)O.I.H.G.S.X.
0.3538.90.92Zm.7544.1.A1_atBM334017mRNA-3e-2At3g20650mRNA capping enzyme family proteinO.I.H.G.S.X.
0.3233.40.92Zm.8723.1.A1_a_atBM351794hypothetical protein LOC100277811-3e-1At3g28321unknown proteinO.I.H.G.S.X.
0.2521.30.94Zm.4027.2.A1_atCO527250hypothetical protein LOC100272558-6e-1At1g49600ATRBP47A (Arabidopsis thaliana RNA-binding protein 47a)O.I.H.G.S.X.
0.2014.20.93Zm.3518.1.A1_atBM337627--1e+0At2g22000PROPEP6 (Elicitor peptide 6 precursor)O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7188.20.91Zm.7543.1.A1_atCD997722hypothetical protein LOC100192002-4e-6At1g66530arginyl-tRNA synthetase, putative / arginine--tRNA ligase, putativeO.I.H.G.S.X.
0.5065.70.84Zm.18470.1.A1_atCO520498hypothetical protein LOC100279437-7e+0At5g26848unknown proteinO.I.H.G.S.X.
0.5065.70.87Zm.15771.1.S1_atCA402381--8e-1At3g43290unknown proteinO.I.H.G.S.X.
0.4455.70.93Zm.10170.2.S1_atBM078288Hypothetical protein LOC100194222-3e-14At5g56140KH domain-containing proteinO.I.H.G.S.X.
0.4251.30.89Zm.16346.1.A1_atAY108153.1hypothetical protein LOC100191168 /// 40S ribosomal protein S30-2e-8At4g2939040S ribosomal protein S30 (RPS30B)O.I.H.G.S.X.
0.3437.20.89Zm.18280.1.S1_atBG840762hypothetical protein LOC100193238-2e+0At5g42797LCR28 (Low-molecular-weight cysteine-rich 28)O.I.H.G.S.X.
0.3336.00.81ZmAffx.1111.1.A1_atAW231338--8e-1At4g00560methionine adenosyltransferase regulatory beta subunit-relatedO.I.H.G.S.X.
0.3233.40.80Zm.10896.1.A1_atAY106661.1--2e-1At2g23920unknown proteinO.I.H.G.S.X.
0.3233.40.88Zm.4045.1.S1_atBE5187796-phosphogluconolactonase-3e+0At1g13700glucosamine/galactosamine-6-phosphate isomerase family proteinO.I.H.G.S.X.
0.3131.60.87Zm.1814.1.S1_atCN844296hypothetical protein LOC100192709-9e-15At2g35530bZIP transcription factor family proteinO.I.H.G.S.X.
0.3131.60.93Zm.9783.1.A1_atBM347856--1e+0At3g29200CM1 (CHORISMATE MUTASE 1)O.I.H.G.S.X.
0.3029.80.87Zm.17621.1.S1_atCK368339--5e+0At2g17740DC1 domain-containing proteinO.I.H.G.S.X.
0.2928.10.88Zm.15732.1.A1_x_atAY104940.1--6e-9At3g06980DEAD/DEAH box helicase, putativeO.I.H.G.S.X.
0.2724.60.78Zm.14335.1.S1_atCD991146--1e-12At5g67320HOS15 (high expression of osmotically responsive genes 15)O.I.H.G.S.X.
0.2724.60.95Zm.6567.1.A1_atBM072999--2e+0At5g41030TCP family transcription factor, putativeO.I.H.G.S.X.
0.2521.30.92Zm.6588.1.A1_atBM080221hypothetical protein LOC100192010-5e-23At1g78630emb1473 (embryo defective 1473)O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
17.999.2GSM162267Mutant 1 with array type maize from AffymetrixGSE7030Phenotypic and molecular characterisation of a novel Bt2 allele in maizeLink to GEO
10.298.4GSM162265Wild type 1 with array type maize from AffymetrixGSE7030Phenotypic and molecular characterisation of a novel Bt2 allele in maizeLink to GEO
9.598.3GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.298.2GSM320467protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.898.1GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.098.0GSM162266Wild type 2 with array type maize from AffymetrixGSE7030Phenotypic and molecular characterisation of a novel Bt2 allele in maizeLink to GEO
7.997.9GSM162264Mutant 2 with array type maize from AffymetrixGSE7030Phenotypic and molecular characterisation of a novel Bt2 allele in maizeLink to GEO
7.897.9GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.697.1GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.597.1GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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